iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Cne-027054

Ensembl Protein ID

AAW45320

UniProt Accession

P0CS50; Q55MW6; Q5KB95; SEC13_CRYNJ

Genbank Protein ID

AAW45320.1

Protein Name

Protein transport protein SEC13

Genbank Nucleotide ID

AE017349

Gene Name

SEC13; CNI03320

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
CNI03320	AAW45320	AAW45320

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	2.60e-28	95.3	66	98

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf..sd..tllvsGsdDgtikvWD 29
           gHt+ v+ +++  ++   +l+s+s+Dg + +W 
   Q: 66   GHTAAVWQVSWahPSfgSILASCSYDGRVFIWK 98
           8************6665789************6 PP

Organism

Cryptococcus neoformans

Functional Description
(View)

Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. It also functions as a component of the nuclear pore complex (NPC). NPC components, collectively referred to as nucleoporins (NUPs), can play the role of both NPC structural components and of docking or interaction partners for transiently associated nuclear transport factors. SEC13 is required for efficient mRNA export from the nucleus to the cytoplasm and for correct nuclear pore biogenesis and distribution (By similarity).

Protein Sequence
(Fasta)

MCLWPLIQSA QASKPVPVET QHEDMIHDAQ LDYYGKRLAT CSSDRTIRIF NVIKGEAKGE 60
PVILKGHTAA VWQVSWAHPS FGSILASCSY DGRVFIWKEV GQGQGKGSGG ELQDGWERIK 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGTGCTTAT GGCCCCTCAT ACAGTCCGCT CAAGCATCAA AACCCGTTCC TGTGGAGACT 60
CAGCATGAGG ACATGATCGT TAGTCTAGCC TGTGCCATGC CTTATATCCT GTTTCTGACC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0968--Cytoplasmic vesicle
KW-0256--Endoplasmic reticulum
KW-0931--ER-Golgi transport
KW-0472--Membrane
KW-0509--mRNA transport
KW-0906--Nuclear pore complex
KW-0539--Nucleus
KW-0653--Protein transport
KW-1185--Reference proteome
KW-0677--Repeat
KW-0811--Translocation
KW-0813--Transport
KW-0853--WD repeat

Interpro

IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0005829--C:cytosol
GO:0005789--C:endoplasmic reticulum membrane
GO:0012507--C:ER to Golgi transport vesicle membrane
GO:0005643--C:nuclear pore
GO:0051028--P:mRNA transport
GO:0015031--P:protein transport
GO:0016192--P:vesicle-mediated transport

KEGG

cne:CNI03320

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000671	Aegilops tauschii	44.72	5.00e-70	255.00
IUUC-Aml-001832	Ailuropoda melanoleuca	50.46	3.00e-82	296.00
IUUC-Atr-002914	Amborella trichopoda	43.43	4.00e-67	246.00
IUUC-Apl-003992	Anas platyrhynchos	50.32	1.00e-77	281.00
IUUC-Aca-005283	Anolis carolinensis	51.08	4.00e-82	296.00
IUUC-Aly-005654	Arabidopsis lyrata	44.83	6.00e-68	248.00
IUUC-Ath-006816	Arabidopsis thaliana	44.51	2.00e-67	246.00
IUUC-Ago-007827	Ashbya gossypii	45.82	2.00e-78	283.00
IUUC-Acl-008205	Aspergillus clavatus	53.04	1.00e-80	290.00
IUUC-Afl-008748	Aspergillus flavus	51.84	1.00e-83	300.00
IUUC-Afu-008791	Aspergillus fumigatus	52.72	7.00e-80	288.00
IUUC-Ani-009152	Aspergillus nidulans	51.23	8.00e-82	294.00
IUUC-Ang-009765	Aspergillus niger	52.53	4.00e-82	295.00
IUUC-Aor-009927	Aspergillus oryzae	52.56	1.00e-80	290.00
IUUC-Ate-010248	Aspergillus terreus	52.45	9.00e-84	301.00
IUUC-Ame-011478	Astyanax mexicanus	48.62	1.00e-81	293.00
IUUC-Bgr-012276	Blumeria graminis	51.61	3.00e-78	283.00
IUUC-Bta-012700	Bos taurus	49.85	5.00e-81	292.00
IUUC-Bci-013722	Botrytis cinerea	50.79	1.00e-81	294.00
IUUC-Bdi-014818	Brachypodium distachyon	45.03	2.00e-70	256.00
IUUC-Bol-015779	Brassica oleracea	45.45	1.00e-68	250.00
IUUC-Bra-016973	Brassica rapa	45.77	4.00e-68	250.00
IUUC-Cel-018479	Caenorhabditis elegans	35.13	7.00e-51	192.00
IUUC-Cja-019956	Callithrix jacchus	49.51	1.00e-74	271.00
IUUC-Cfa-020752	Canis familiaris	50.46	4.00e-82	295.00
IUUC-Cpo-021871	Cavia porcellus	50.15	6.00e-82	295.00
IUUC-Cre-022797	Chlamydomonas reinhardtii	48.12	3.00e-77	279.00
IUUC-Csa-023393	Chlorocebus sabaeus	50.15	3.00e-81	293.00
IUUC-Cho-024786	Choloepus hoffmanni	37.96	2.00e-51	194.00
IUUC-Cin-025332	Ciona intestinalis	48.92	8.00e-79	285.00
IUUC-Csv-025926	Ciona savignyi	48.92	5.00e-78	282.00
IUUC-Cgl-026413	Colletotrichum gloeosporioides	51.77	2.00e-78	283.00
IUUC-Cme-027165	Cyanidioschyzon merolae	37.50	7.00e-48	183.00
IUUC-Dre-027782	Danio rerio	49.23	2.00e-82	296.00
IUUC-Dno-029628	Dasypus novemcinctus	51.08	5.00e-83	298.00
IUUC-Dor-030650	Dipodomys ordii	51.81	5.00e-64	236.00
IUUC-Dse-031206	Dothistroma septosporum	50.63	1.00e-80	290.00
IUUC-Dme-031854	Drosophila melanogaster	46.37	4.00e-71	259.00
IUUC-Ete-032618	Echinops telfairi	38.57	5.00e-30	122.00
IUUC-Eca-033268	Equus caballus	50.15	7.00e-82	295.00
IUUC-Fca-035918	Felis catus	50.77	3.00e-82	296.00
IUUC-Fal-037551	Ficedula albicollis	50.47	2.00e-71	260.00
IUUC-Fox-037763	Fusarium oxysporum	52.63	2.00e-86	310.00
IUUC-Fso-038341	Fusarium solani	52.68	3.00e-82	296.00
IUUC-Gmo-038638	Gadus morhua	48.95	8.00e-82	295.00
IUUC-Ggr-039865	Gaeumannomyces graminis	51.23	7.00e-78	281.00
IUUC-Gga-040193	Gallus gallus	51.38	2.00e-82	297.00
IUUC-Gac-041337	Gasterosteus aculeatus	30.00	2.00e-35	141.00
IUUC-Gma-044311	Glycine max	44.51	6.00e-68	249.00
IUUC-Ggo-045252	Gorilla gorilla	50.46	1.00e-81	295.00
IUUC-Hsa-046565	Homo sapiens	50.46	1.00e-81	294.00
IUUC-Hvu-047835	Hordeum vulgare	45.34	4.00e-71	259.00
IUUC-Itr-048587	Ictidomys tridecemlineatus	50.15	1.00e-81	294.00
IUUC-Kpa-049148	Komagataella pastoris	49.84	3.00e-85	306.00
IUUC-Lch-050421	Latimeria chalumnae	50.31	1.00e-82	298.00
IUUC-Lpe-051187	Leersia perrieri	43.65	3.00e-67	249.00
IUUC-Loc-052167	Lepisosteus oculatus	49.23	3.00e-83	300.00
IUUC-Lma-053250	Leptosphaeria maculans	50.78	1.00e-78	284.00
IUUC-Laf-054304	Loxodonta africana	51.08	8.00e-83	298.00
IUUC-Mcc-055519	Macaca mulatta	50.15	5.00e-81	292.00
IUUC-Meu-056439	Macropus eugenii	49.54	8.00e-81	291.00
IUUC-Mor-057241	Magnaporthe oryzae	51.42	2.00e-77	280.00
IUUC-Mpo-057373	Magnaporthe poae	42.15	1.00e-54	203.00
IUUC-Mtr-058412	Medicago truncatula	44.83	1.00e-68	250.00
IUUC-Mla-058966	Melampsora laricipopulina	52.63	1.00e-98	350.00
IUUC-Mga-060066	Meleagris gallopavo	50.32	1.00e-77	281.00
IUUC-Mvi-060290	Microbotryum violaceum	51.78	7.00e-90	324.00
IUUC-Mmr-060717	Microcebus murinus	50.15	1.00e-81	294.00
IUUC-Mdo-062496	Monodelphis domestica	49.85	3.00e-81	292.00
IUUC-Mmu-063490	Mus musculus	50.15	8.00e-82	295.00
IUUC-Mac-065307	Musa acuminata	44.72	7.00e-68	249.00
IUUC-Mpu-066601	Mustela putorius furo	50.46	4.00e-82	295.00
IUUC-Mlu-067501	Myotis lucifugus	50.46	6.00e-82	295.00
IUUC-Nfi-068360	Neosartorya fischeri	51.09	1.00e-65	240.00
IUUC-Ncr-068928	Neurospora crassa	51.38	2.00e-81	293.00
IUUC-Nle-069028	Nomascus leucogenys	50.15	1.00e-81	294.00
IUUC-Opr-070446	Ochotona princeps	49.37	3.00e-77	279.00
IUUC-Ont-071587	Oreochromis niloticus	49.10	1.00e-82	297.00
IUUC-Oan-073211	Ornithorhynchus anatinus	49.54	2.00e-80	290.00
IUUC-Ocu-074306	Oryctolagus cuniculus	50.46	4.00e-81	292.00
IUUC-Oba-075069	Oryza barthii	44.10	1.00e-69	254.00
IUUC-Obr-076667	Oryza brachyantha	44.10	3.00e-70	256.00
IUUC-Ogl-077208	Oryza glaberrima	44.10	1.00e-69	254.00
IUUC-Ogu-078513	Oryza glumaepatula	44.10	1.00e-69	254.00
IUUC-Oin-079094	Oryza indica	44.10	1.00e-69	254.00
IUUC-Olo-080473	Oryza longistaminata	44.10	1.00e-69	254.00
IUUC-Ome-081643	Oryza meridionalis	44.10	1.00e-69	254.00
IUUC-Oni-082589	Oryza nivara	44.10	1.00e-69	254.00
IUUC-Opu-083677	Oryza punctata	44.10	1.00e-69	254.00
IUUC-Oru-084537	Oryza rufipogon	44.10	1.00e-69	254.00
IUUC-Osa-085449	Oryza sativa	44.10	1.00e-69	254.00
IUUC-Ola-087226	Oryzias latipes	49.07	9.00e-82	294.00
IUUC-Olu-087893	Ostreococcus lucimarinus	43.45	8.00e-64	234.00
IUUC-Oga-088837	Otolemur garnettii	50.15	2.00e-81	294.00
IUUC-Oar-089594	Ovis aries	50.46	1.00e-81	294.00
IUUC-Ptr-091132	Pan troglodytes	50.46	8.00e-82	295.00
IUUC-Pan-092013	Papio anubis	27.76	5.00e-27	112.00
IUUC-Psi-093568	Pelodiscus sinensis	50.16	1.00e-78	283.00
IUUC-Pma-094756	Petromyzon marinus	49.60	3.00e-30	121.00
IUUC-Pno-094955	Phaeosphaeria nodorum	48.43	4.00e-75	272.00
IUUC-Ppa-095835	Physcomitrella patens	44.06	3.00e-66	243.00
IUUC-Pfo-096063	Poecilia formosa	49.69	1.00e-82	297.00
IUUC-Pab-098674	Pongo abelii	50.46	3.00e-81	293.00
IUUC-Pop-099868	Populus trichocarpa	44.51	2.00e-66	243.00
IUUC-Pca-100824	Procavia capensis	38.15	2.00e-52	197.00
IUUC-Ppe-101278	Prunus persica	43.89	6.00e-66	241.00
IUUC-Pva-103161	Pteropus vampyrus	48.00	5.00e-76	275.00
IUUC-Pgr-103573	Puccinia graminis	54.41	5.00e-96	342.00
IUUC-Ptt-103700	Puccinia triticina	52.81	3.00e-89	319.00
IUUC-Pte-104267	Pyrenophora teres	48.59	3.00e-75	273.00
IUUC-Pyt-104535	Pyrenophora triticirepentis	48.58	9.00e-74	268.00
IUUC-Rno-104833	Rattus norvegicus	50.15	9.00e-82	294.00
IUUC-Sce-106437	Saccharomyces cerevisiae	46.86	2.00e-74	270.00
IUUC-Sha-106611	Sarcophilus harrisii	49.54	8.00e-81	291.00
IUUC-Sja-107654	Schizosaccharomyces japonicus	49.54	1.00e-88	317.00
IUUC-Spo-108362	Schizosaccharomyces pombe	50.31	2.00e-86	310.00
IUUC-Smo-108797	Selaginella moellendorffii	45.82	4.00e-69	252.00
IUUC-Sit-110132	Setaria italica	44.72	1.00e-69	254.00
IUUC-Sly-111852	Solanum lycopersicum	43.57	3.00e-67	246.00
IUUC-Stu-112195	Solanum tuberosum	43.26	6.00e-67	245.00
IUUC-Sar-113279	Sorex araneus	27.92	3.00e-25	107.00
IUUC-Sbi-114229	Sorghum bicolor	44.41	1.00e-69	254.00
IUUC-Sre-114898	Sporisorium reilianum	53.22	1.00e-103	367.00
IUUC-Ssc-115995	Sus scrofa	55.06	2.00e-43	166.00
IUUC-Tgu-116793	Taeniopygia guttata	50.15	9.00e-75	271.00
IUUC-Tru-117797	Takifugu rubripes	49.10	1.00e-82	297.00
IUUC-Tsy-118913	Tarsius syrichta	27.76	8.00e-23	99.00
IUUC-Tni-120366	Tetraodon nigroviridis	49.25	7.00e-83	298.00
IUUC-Tca-121242	Theobroma cacao	43.89	2.00e-66	243.00
IUUC-Tre-121899	Trichoderma reesei	53.18	3.00e-84	303.00
IUUC-Tvi-122380	Trichoderma virens	53.02	5.00e-83	298.00
IUUC-Tae-124286	Triticum aestivum	45.65	2.00e-71	260.00
IUUC-Tur-126202	Triticum urartu	45.34	2.00e-71	259.00
IUUC-Tme-127181	Tuber melanosporum	48.15	6.00e-80	289.00
IUUC-Ttr-128448	Tursiops truncatus	47.81	2.00e-62	230.00
IUUC-Uma-129661	Ustilago maydis	52.41	7.00e-104	368.00
IUUC-Vda-129666	Verticillium dahliae	49.52	7.00e-78	281.00
IUUC-Vpa-130318	Vicugna pacos	50.46	1.00e-81	294.00
IUUC-Vvi-130868	Vitis vinifera	45.14	1.00e-68	251.00
IUUC-Xtr-131859	Xenopus tropicalis	50.77	5.00e-83	298.00
IUUC-Xma-133898	Xiphophorus maculatus	49.54	3.00e-82	296.00
IUUC-Yli-134559	Yarrowia lipolytica	51.10	1.00e-81	293.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence