iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Sbi-114465

Ensembl Protein ID

Sb01g046850.1

UniProt Accession

C5WXV5; C5WXV5_SORBI

Genbank Protein ID

EER95491.1

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

CM000760

Gene Name

SORBI_001G501400

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Sb01g046850	Sb01g046850.1	Sb01g046850.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.00e-47	158.8	148	186
UBD/Beta-Prp	7.30e-93	311.8	113	429

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf..sdtllvsGsdDgtikvWDlrtgvllk 37
           gH d vt+l f  s++ lvs+s D+ i+vWDl t+++l+
   Q: 148  GHRDQVTDLVFldSGKKLVSCSKDKFIRVWDLETQHCLQ 186
           8**********95559*********************97 PP

UBD/Beta-Prp

   S: 15   cvkfspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfspsgdklv 110
           ++ f p++ +la+gs+d  +++wdv  +  l +l gh ++vt++ f ++gk lv++s+D++i+vwdl+t  c++++ gh ++++s++++ps  +lv
   Q: 113  ALRFGPSGAVLASGSKDCDVILWDVVAQAGLFRLRGHRDQVTDLVFLDSGKKLVSCSKDKFIRVWDLETQHCLQIVGGHRSEIWSMDVDPSERFLV 208
           67899******************************************************************************************* PP
   S: 111  sGshdrtirvwdletgqclee.............tlsghdgvvncvvvhpdgnllvsGslDrtvrlWdl.....ktgkllrtl.tgghtdsvysls 187
           sGs+d  ++v+ +++  +  e             + ++ ++ v  v+++ dg+l+v   + +t  ++++     +  k  r+  +++ + s +s++
   Q: 209  SGSADPELQVFRIRQSVEEGEdwskwdvlklfgeIPRQSKERVANVRFNRDGSLVVCQVAGKTADIYRVldeteAARKAKRRVnRKKEKASAKSMI 304
           ***********99888887779***********************************************999984444444445555778888888 PP
   S: 188  fdsng................................................kelvsgs.ldgtvklwdlqtgec....vrtlnghtdnvksvrf 230
            ++ng                                                  ++s s +++ ++ +++ ++++     ++++gh++ ++s+ +
   Q: 305  AEDNGtiidplpaknlqnptvivtdvfklfqvlraskkicsvafspsnpprgcLAILSLSlNNNMLETYSVDSEKVskmySVEMHGHRSDIRSISL 400
           777777777777777777777777778888888888888888888888***995556655156789******66665555999************* PP
   S: 231  spnderlvsgssDgsiriWdlrsgdllktl 260
            ++d++l+s+s ++ ++iW+  +g++l+t+
   Q: 401  NSEDNLLMSTS-HNAVKIWNPSTGECLRTI 429
           **********8.9**************987 PP

Organism

Sorghum bicolor

Protein Sequence
(Fasta)

MVKAYLRYEP ALTFGVIASP ESNVVYDPSG RRLLAAALDR LVAWDLKRGL PSVSFAPSSS 60
SFSLAVSCIA SSPSAAVSSS IASGHADGSI RLWDAETGGC EATLHGHRSA ASALRFGPSG 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGTGAAGG CTTACCTCCG CTACGAGCCG GCCCTCACCT TCGGTGTGAT TGCGTCGCCG 60
GAGTCCAACG TCGTCTACGA CCCCTCCGGC CGCCGCCTCC TCGCCGCCGC CCTCGACCGC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR003143--Cyt_cd1_C
IPR020472--G-protein_beta_WD-40_rep
IPR011041--Quinoprot_gluc/sorb_DH
IPR011047--Quinoprotein_ADH-like_supfam
IPR007148--SSU_processome_Utp12
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF04003--Utp12
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0034388--C:Pwp2p-containing subcomplex of 90S preribosome
GO:0032040--C:small-subunit processome
GO:0003824--F:catalytic activity
GO:0030515--F:snoRNA binding
GO:0000462--P:maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

KEGG

sbi:SORBI_01g046850

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000784	Aegilops tauschii	79.07	0.00e+00	1311.00
IUUC-Aml-001245	Ailuropoda melanoleuca	36.82	1.00e-167	583.00
IUUC-Atr-002700	Amborella trichopoda	56.92	0.00e+00	990.00
IUUC-Apl-004164	Anas platyrhynchos	39.80	2.00e-134	471.00
IUUC-Aca-004765	Anolis carolinensis	37.53	2.00e-170	592.00
IUUC-Aly-006503	Arabidopsis lyrata	58.47	0.00e+00	1034.00
IUUC-Ath-006848	Arabidopsis thaliana	58.14	0.00e+00	1044.00
IUUC-Ago-007909	Ashbya gossypii	33.20	1.00e-145	509.00
IUUC-Acl-008238	Aspergillus clavatus	37.61	3.00e-158	551.00
IUUC-Afl-008544	Aspergillus flavus	36.85	1.00e-151	530.00
IUUC-Afu-008868	Aspergillus fumigatus	37.57	8.00e-157	546.00
IUUC-Ani-009367	Aspergillus nidulans	35.79	1.00e-153	536.00
IUUC-Ang-009732	Aspergillus niger	37.82	1.00e-161	563.00
IUUC-Aor-010140	Aspergillus oryzae	37.23	3.00e-154	538.00
IUUC-Ate-010572	Aspergillus terreus	36.50	7.00e-154	537.00
IUUC-Ame-010956	Astyanax mexicanus	36.50	4.00e-154	538.00
IUUC-Bgr-012296	Blumeria graminis	34.49	1.00e-153	536.00
IUUC-Bta-012716	Bos taurus	36.81	6.00e-170	590.00
IUUC-Bci-013699	Botrytis cinerea	34.71	5.00e-148	517.00
IUUC-Bdi-014525	Brachypodium distachyon	83.32	0.00e+00	1457.00
IUUC-Bol-015117	Brassica oleracea	58.72	0.00e+00	1003.00
IUUC-Bra-016869	Brassica rapa	58.61	0.00e+00	1008.00
IUUC-Cel-018570	Caenorhabditis elegans	29.87	3.00e-92	332.00
IUUC-Cja-019425	Callithrix jacchus	37.01	9.00e-169	586.00
IUUC-Cfa-020787	Canis familiaris	37.24	9.00e-167	580.00
IUUC-Cpo-021729	Cavia porcellus	39.43	2.00e-134	472.00
IUUC-Cre-022678	Chlamydomonas reinhardtii	47.36	2.00e-114	406.00
IUUC-Csa-024098	Chlorocebus sabaeus	37.30	1.00e-172	599.00
IUUC-Cho-024495	Choloepus hoffmanni	35.12	5.00e-94	338.00
IUUC-Cin-025245	Ciona intestinalis	33.57	1.00e-96	345.00
IUUC-Cgl-026708	Colletotrichum gloeosporioides	35.16	2.00e-146	512.00
IUUC-Cne-026835	Cryptococcus neoformans	40.41	9.00e-110	390.00
IUUC-Cme-027162	Cyanidioschyzon merolae	25.60	3.00e-59	223.00
IUUC-Dre-027874	Danio rerio	39.03	8.00e-171	593.00
IUUC-Dno-028905	Dasypus novemcinctus	37.34	3.00e-171	595.00
IUUC-Dor-030383	Dipodomys ordii	40.74	4.00e-65	242.00
IUUC-Dse-031297	Dothistroma septosporum	34.14	2.00e-146	512.00
IUUC-Dme-031956	Drosophila melanogaster	32.66	4.00e-125	441.00
IUUC-Ete-032608	Echinops telfairi	35.12	7.00e-94	337.00
IUUC-Eca-034181	Equus caballus	37.34	1.00e-169	589.00
IUUC-Eeu-034495	Erinaceus europaeus	37.46	6.00e-165	573.00
IUUC-Fca-035994	Felis catus	37.46	2.00e-160	558.00
IUUC-Fal-036611	Ficedula albicollis	42.93	2.00e-127	449.00
IUUC-Fox-037807	Fusarium oxysporum	33.82	2.00e-152	532.00
IUUC-Fso-038090	Fusarium solani	33.88	4.00e-149	521.00
IUUC-Gmo-039018	Gadus morhua	33.02	6.00e-79	287.00
IUUC-Ggr-039748	Gaeumannomyces graminis	34.95	4.00e-154	538.00
IUUC-Gga-040707	Gallus gallus	38.49	2.00e-169	588.00
IUUC-Gac-042334	Gasterosteus aculeatus	31.72	7.00e-69	254.00
IUUC-Gma-043860	Glycine max	60.96	0.00e+00	1015.00
IUUC-Ggo-045334	Gorilla gorilla	37.16	2.00e-168	585.00
IUUC-Hsa-046996	Homo sapiens	37.03	1.00e-169	589.00
IUUC-Hvu-047381	Hordeum vulgare	82.50	0.00e+00	874.00
IUUC-Itr-047938	Ictidomys tridecemlineatus	36.71	1.00e-166	579.00
IUUC-Kpa-049185	Komagataella pastoris	32.82	3.00e-140	491.00
IUUC-Lch-050098	Latimeria chalumnae	36.10	2.00e-143	502.00
IUUC-Lpe-050710	Leersia perrieri	81.89	0.00e+00	1407.00
IUUC-Loc-052745	Lepisosteus oculatus	36.52	2.00e-156	545.00
IUUC-Lma-053104	Leptosphaeria maculans	35.01	4.00e-156	545.00
IUUC-Laf-054395	Loxodonta africana	37.57	5.00e-169	587.00
IUUC-Mcc-055077	Macaca mulatta	37.20	1.00e-170	592.00
IUUC-Meu-056418	Macropus eugenii	43.32	1.00e-98	353.00
IUUC-Mor-057031	Magnaporthe oryzae	35.05	9.00e-139	487.00
IUUC-Mpo-057420	Magnaporthe poae	34.47	4.00e-146	511.00
IUUC-Mtr-057838	Medicago truncatula	61.17	0.00e+00	1061.00
IUUC-Mla-058854	Melampsora laricipopulina	34.04	1.00e-135	476.00
IUUC-Mga-060120	Meleagris gallopavo	41.19	1.00e-129	456.00
IUUC-Mvi-060407	Microbotryum violaceum	41.60	7.00e-126	444.00
IUUC-Mmr-060635	Microcebus murinus	37.14	1.00e-169	589.00
IUUC-Mdo-063023	Monodelphis domestica	37.43	3.00e-171	595.00
IUUC-Mmu-064103	Mus musculus	37.24	2.00e-172	598.00
IUUC-Mac-065569	Musa acuminata	71.00	0.00e+00	1276.00
IUUC-Mpu-066462	Mustela putorius furo	36.75	5.00e-167	580.00
IUUC-Mlu-067894	Myotis lucifugus	36.81	2.00e-167	582.00
IUUC-Nfi-068321	Neosartorya fischeri	37.06	6.00e-156	544.00
IUUC-Ncr-068661	Neurospora crassa	34.68	8.00e-154	536.00
IUUC-Nle-069409	Nomascus leucogenys	37.34	4.00e-171	594.00
IUUC-Opr-070445	Ochotona princeps	41.12	7.00e-122	431.00
IUUC-Ont-072339	Oreochromis niloticus	37.49	7.00e-165	573.00
IUUC-Oan-073688	Ornithorhynchus anatinus	37.39	6.00e-161	560.00
IUUC-Ocu-074227	Oryctolagus cuniculus	37.41	3.00e-171	594.00
IUUC-Oba-075635	Oryza barthii	83.32	0.00e+00	1378.00
IUUC-Obr-076897	Oryza brachyantha	83.53	0.00e+00	1446.00
IUUC-Ogl-077555	Oryza glaberrima	83.21	0.00e+00	1377.00
IUUC-Ogu-078724	Oryza glumaepatula	83.10	0.00e+00	1383.00
IUUC-Oin-080030	Oryza indica	83.10	0.00e+00	1377.00
IUUC-Olo-080687	Oryza longistaminata	78.78	0.00e+00	1324.00
IUUC-Ome-081867	Oryza meridionalis	83.10	0.00e+00	1377.00
IUUC-Oni-082559	Oryza nivara	83.00	0.00e+00	1372.00
IUUC-Opu-083332	Oryza punctata	77.62	0.00e+00	1253.00
IUUC-Oru-084455	Oryza rufipogon	83.00	0.00e+00	1374.00
IUUC-Osa-085793	Oryza sativa	83.00	0.00e+00	1374.00
IUUC-Ola-087395	Oryzias latipes	38.95	8.00e-142	497.00
IUUC-Olu-087768	Ostreococcus lucimarinus	43.89	0.00e+00	630.00
IUUC-Oga-088574	Otolemur garnettii	36.88	5.00e-169	587.00
IUUC-Oar-089453	Ovis aries	36.63	2.00e-170	592.00
IUUC-Ptr-090694	Pan troglodytes	37.24	9.00e-171	593.00
IUUC-Pan-092420	Papio anubis	37.22	2.00e-169	588.00
IUUC-Psi-093683	Pelodiscus sinensis	37.26	7.00e-165	573.00
IUUC-Pma-094197	Petromyzon marinus	39.38	9.00e-38	149.00
IUUC-Pno-094783	Phaeosphaeria nodorum	34.42	2.00e-150	525.00
IUUC-Ppa-095208	Physcomitrella patens	50.42	0.00e+00	825.00
IUUC-Pfo-096299	Poecilia formosa	37.58	4.00e-172	597.00
IUUC-Pab-098706	Pongo abelii	37.06	6.00e-169	587.00
IUUC-Pop-099275	Populus trichocarpa	61.62	0.00e+00	1095.00
IUUC-Pca-100796	Procavia capensis	31.89	8.00e-110	390.00
IUUC-Ppe-101861	Prunus persica	62.19	0.00e+00	1095.00
IUUC-Pva-103241	Pteropus vampyrus	36.66	4.00e-159	554.00
IUUC-Pgr-103432	Puccinia graminis	34.50	5.00e-133	468.00
IUUC-Ptt-103742	Puccinia triticina	44.04	3.00e-84	306.00
IUUC-Pte-104069	Pyrenophora teres	35.11	4.00e-149	521.00
IUUC-Pyt-104650	Pyrenophora triticirepentis	35.42	2.00e-154	539.00
IUUC-Rno-105219	Rattus norvegicus	36.33	4.00e-165	574.00
IUUC-Sce-106271	Saccharomyces cerevisiae	34.03	3.00e-137	482.00
IUUC-Sha-107550	Sarcophilus harrisii	36.58	2.00e-165	575.00
IUUC-Sja-107664	Schizosaccharomyces japonicus	36.01	2.00e-157	548.00
IUUC-Spo-108239	Schizosaccharomyces pombe	35.77	1.00e-162	566.00
IUUC-Ssl-108626	Sclerotinia sclerotiorum	35.19	3.00e-152	531.00
IUUC-Smo-109477	Selaginella moellendorffii	52.33	0.00e+00	889.00
IUUC-Sit-110000	Setaria italica	93.39	0.00e+00	1564.00
IUUC-Sly-111595	Solanum lycopersicum	60.30	0.00e+00	1011.00
IUUC-Stu-112516	Solanum tuberosum	60.41	0.00e+00	1011.00
IUUC-Sar-113195	Sorex araneus	43.83	3.00e-122	432.00
IUUC-Sre-115006	Sporisorium reilianum	34.24	1.00e-137	483.00
IUUC-Ssc-115929	Sus scrofa	37.34	8.00e-170	590.00
IUUC-Tgu-117282	Taeniopygia guttata	42.76	4.00e-124	438.00
IUUC-Tru-118406	Takifugu rubripes	36.69	8.00e-160	556.00
IUUC-Tsy-119170	Tarsius syrichta	37.33	6.00e-167	580.00
IUUC-Tni-119721	Tetraodon nigroviridis	36.86	1.00e-156	546.00
IUUC-Tca-121761	Theobroma cacao	64.00	0.00e+00	1114.00
IUUC-Tre-121908	Trichoderma reesei	34.00	3.00e-150	525.00
IUUC-Tvi-122547	Trichoderma virens	35.19	3.00e-152	531.00
IUUC-Tae-125433	Triticum aestivum	81.83	0.00e+00	1393.00
IUUC-Tur-126811	Triticum urartu	84.70	0.00e+00	1371.00
IUUC-Tme-126987	Tuber melanosporum	37.55	1.00e-166	579.00
IUUC-Tbe-127315	Tupaia belangeri	43.85	9.00e-108	384.00
IUUC-Ttr-129165	Tursiops truncatus	32.17	4.00e-127	448.00
IUUC-Uma-129651	Ustilago maydis	33.46	9.00e-140	490.00
IUUC-Vda-129973	Verticillium dahliae	34.81	3.00e-146	512.00
IUUC-Vpa-130163	Vicugna pacos	31.11	3.00e-57	216.00
IUUC-Vvi-131402	Vitis vinifera	62.35	0.00e+00	1078.00
IUUC-Xtr-132296	Xenopus tropicalis	38.10	5.00e-166	577.00
IUUC-Xma-133028	Xiphophorus maculatus	37.51	6.00e-171	593.00
IUUC-Yli-134484	Yarrowia lipolytica	37.74	3.00e-155	541.00
IUUC-Zma-135938	Zea mays	92.70	0.00e+00	1616.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence