iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Ocu-074150

UUCD1 version

UUC-OrC-00412

Ensembl Protein ID

ENSOCUP00000009765.2

UniProt Accession

G1T151; G1T151_RABIT

Protein Name

Uncharacterized protein

Gene Name

CSTF1

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSOCUG00000011351.3	ENSOCUT00000011347.2	ENSOCUP00000009765.2

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	8.10e-27	92.2	172	202
UBD/Beta-Prp	4.80e-61	206.6	102	422

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf.sd.tllvsGsdDgtikvWDl 30
           H d+vtclaf ++  +l+sGs+D t+k++D+
   Q: 172  HVDEVTCLAFhPTeQILASGSRDYTLKLFDY 202
           9**********77799**************7 PP

UBD/Beta-Prp

   S: 4    tlkghhksvitcvkfspdksllatgsrdgtikvwdvttgkl.......................lrslsgheaevtavkfspdgkilvt 69
           ++ ++hk+++++ ++s+d++l+atgs+d++ik+ d++++ +                       +r+l++h +evt++ f+p+++il++
   Q: 102  CYVTSHKGPCRVATYSRDGQLIATGSADASIKILDTERMLAksampievmmnetaqqnmenhpvIRTLYDHVDEVTCLAFHPTEQILAS 190
           67889*********************************988************************************************ PP
   S: 70   gseDrtikvwdlstgkcvhtlk..ghedsvlslsfspsgdklvsGshdrtirvwdletgqclee..tlsghdgvvncvvvhpdgnllvs 154
           gs+D+t+k++d+s+++  +++k  ++ ++++s+sf+psgd++++G+++ t+r++d++t qc+ +  ++++h++++++v+++p++n++v+
   Q: 191  GSRDYTLKLFDYSKPSAKRAFKyiQEAEMLRSISFHPSGDFILVGTQHPTLRLYDINTFQCFVScnPQDQHTDAICSVNYNPSANMYVT 279
           *****************99999999***************************************99*********************** PP
   S: 155  GslDrtvrlWdlktgkllrtltgghtdsvysls.fdsngkelvsgsldgtvklwdlqtgecvrtlnght.....dnvksvrfs.pnder 236
           Gs+D++++lWd  ++++++t++++h+++  + + f++n+k+++s ++d+  klw+++tg+++++++g         +  ++f  + d+r
   Q: 280  GSKDGCIKLWDGVSNRCITTFEKAHDGAEVCSAiFSKNSKYILSSGKDSVAKLWEISTGRTLVRYTGMYllhvcGGP--LAFMnDPDHR 366
           *********************9999998777666*******************************996522222111..2232344444 PP
   S: 237  lvsgssDgs.iriWdlrsgdllktlqlhnssvisvavlsfgdnvlvlgsedskvniwkl 294
           l+  + + + + ++ +r+ +l +  + +++ +i+v     ++  ++++s+d ++++w  
   Q: 367  LIPETVELVhLCVFRMRHCTLRSPPKSQRNDIICVIS---QYCGFMTCSDDFRARFWYR 422
           4444433330333555665555566666666666666...6666666666666666665 PP

Organism

Oryctolagus cuniculus

Protein Sequence
(Fasta)

MYRTKVGLKD RQQLYKLIIS QLLYDGYISI ANGLINEIKP QSVCAPSEQL LHLIKLGMEN 60
DDTAVQYAIG RSDTVAPGTG IDLEFDADVQ TMSPEASEYE TCYVTSHKGP CRVATYSRDG 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CTGGCAGGGA CGCTGTCCTA ACCCCCAGGA TGTACAGAAC CAAAGTGGGC CTGAAGGACC 60
GCCAGCAGCT GTACAAGCTC ATCATCAGCC AGCTGCTCTA TGACGGCTAC ATCAGCATCG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR032028--CSTF1_dimer
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF16699--CSTF1_dimer
PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0005654--C:nucleoplasm
GO:0003723--F:RNA binding

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-002163	Ailuropoda melanoleuca	87.96	0.00e+00	766.00
IUUC-Atr-002687	Amborella trichopoda	37.99	5.00e-67	248.00
IUUC-Apl-003438	Anas platyrhynchos	86.57	0.00e+00	756.00
IUUC-Aca-005178	Anolis carolinensis	85.65	0.00e+00	751.00
IUUC-Aly-005791	Arabidopsis lyrata	33.81	3.00e-64	239.00
IUUC-Ath-006689	Arabidopsis thaliana	34.75	2.00e-64	239.00
IUUC-Ame-011217	Astyanax mexicanus	75.26	2.00e-122	431.00
IUUC-Bta-012619	Bos taurus	87.73	0.00e+00	765.00
IUUC-Bdi-014515	Brachypodium distachyon	44.58	4.00e-63	235.00
IUUC-Bra-017450	Brassica rapa	35.80	5.00e-61	228.00
IUUC-Cel-018151	Caenorhabditis elegans	45.45	1.00e-105	376.00
IUUC-Cja-019304	Callithrix jacchus	87.73	0.00e+00	763.00
IUUC-Cfa-020208	Canis familiaris	87.96	0.00e+00	766.00
IUUC-Cpo-022245	Cavia porcellus	87.96	0.00e+00	766.00
IUUC-Csa-023066	Chlorocebus sabaeus	87.73	0.00e+00	763.00
IUUC-Cho-024770	Choloepus hoffmanni	86.13	0.00e+00	650.00
IUUC-Cin-025621	Ciona intestinalis	49.88	7.00e-122	430.00
IUUC-Csv-026071	Ciona savignyi	52.66	9.00e-132	463.00
IUUC-Dre-028254	Danio rerio	78.57	0.00e+00	694.00
IUUC-Dno-029903	Dasypus novemcinctus	87.96	0.00e+00	766.00
IUUC-Dor-030423	Dipodomys ordii	87.73	0.00e+00	766.00
IUUC-Dme-031993	Drosophila melanogaster	47.87	2.00e-103	369.00
IUUC-Ete-032689	Echinops telfairi	98.66	4.00e-82	298.00
IUUC-Eca-033316	Equus caballus	87.73	0.00e+00	765.00
IUUC-Eeu-035001	Erinaceus europaeus	83.80	0.00e+00	731.00
IUUC-Fca-036447	Felis catus	87.96	0.00e+00	766.00
IUUC-Fal-037601	Ficedula albicollis	86.57	0.00e+00	756.00
IUUC-Gmo-038531	Gadus morhua	77.06	0.00e+00	667.00
IUUC-Gga-040869	Gallus gallus	86.34	0.00e+00	753.00
IUUC-Gac-042380	Gasterosteus aculeatus	77.57	0.00e+00	685.00
IUUC-Gma-043478	Glycine max	39.82	1.00e-69	256.00
IUUC-Ggo-045302	Gorilla gorilla	87.73	0.00e+00	763.00
IUUC-Hsa-045678	Homo sapiens	87.73	0.00e+00	763.00
IUUC-Hvu-047301	Hordeum vulgare	44.62	1.00e-64	240.00
IUUC-Itr-048259	Ictidomys tridecemlineatus	87.96	0.00e+00	766.00
IUUC-Lch-050319	Latimeria chalumnae	82.72	0.00e+00	729.00
IUUC-Lpe-051440	Leersia perrieri	43.22	5.00e-56	211.00
IUUC-Loc-052035	Lepisosteus oculatus	79.95	0.00e+00	704.00
IUUC-Laf-054275	Loxodonta africana	87.96	0.00e+00	766.00
IUUC-Mcc-055857	Macaca mulatta	74.54	1.00e-176	612.00
IUUC-Meu-056194	Macropus eugenii	99.37	6.00e-92	330.00
IUUC-Mtr-058667	Medicago truncatula	39.19	3.00e-63	235.00
IUUC-Mga-059710	Meleagris gallopavo	86.34	0.00e+00	753.00
IUUC-Mmr-060604	Microcebus murinus	87.96	0.00e+00	766.00
IUUC-Mdo-062953	Monodelphis domestica	87.27	0.00e+00	761.00
IUUC-Mmu-064292	Mus musculus	87.96	0.00e+00	766.00
IUUC-Mac-064568	Musa acuminata	37.91	7.00e-62	230.00
IUUC-Mpu-066294	Mustela putorius furo	56.18	5.00e-121	427.00
IUUC-Mlu-067995	Myotis lucifugus	87.04	0.00e+00	756.00
IUUC-Nle-069322	Nomascus leucogenys	87.73	0.00e+00	763.00
IUUC-Opr-070580	Ochotona princeps	87.50	0.00e+00	763.00
IUUC-Ont-072554	Oreochromis niloticus	80.41	0.00e+00	707.00
IUUC-Oan-072856	Ornithorhynchus anatinus	86.81	0.00e+00	758.00
IUUC-Oba-075585	Oryza barthii	35.29	3.00e-51	196.00
IUUC-Obr-076069	Oryza brachyantha	37.50	1.00e-56	213.00
IUUC-Ogl-077045	Oryza glaberrima	39.10	2.00e-61	229.00
IUUC-Ogu-078697	Oryza glumaepatula	39.30	1.00e-59	225.00
IUUC-Oin-080119	Oryza indica	39.10	2.00e-61	229.00
IUUC-Olo-081093	Oryza longistaminata	29.21	1.00e-28	122.00
IUUC-Ome-081718	Oryza meridionalis	30.77	1.00e-37	151.00
IUUC-Oni-082072	Oryza nivara	35.29	3.00e-51	196.00
IUUC-Opu-084080	Oryza punctata	32.43	4.00e-38	151.00
IUUC-Oru-085070	Oryza rufipogon	36.36	2.00e-50	194.00
IUUC-Osa-086149	Oryza sativa	39.10	2.00e-61	229.00
IUUC-Ola-086697	Oryzias latipes	79.95	0.00e+00	707.00
IUUC-Oga-088697	Otolemur garnettii	87.96	0.00e+00	766.00
IUUC-Oar-089774	Ovis aries	87.96	0.00e+00	767.00
IUUC-Ptr-090924	Pan troglodytes	87.73	0.00e+00	763.00
IUUC-Pan-092373	Papio anubis	87.73	0.00e+00	763.00
IUUC-Psi-094001	Pelodiscus sinensis	86.34	0.00e+00	754.00
IUUC-Pma-094274	Petromyzon marinus	64.19	2.00e-163	568.00
IUUC-Ppa-095562	Physcomitrella patens	35.03	2.00e-64	239.00
IUUC-Pfo-097235	Poecilia formosa	79.95	0.00e+00	705.00
IUUC-Pab-098608	Pongo abelii	87.73	0.00e+00	763.00
IUUC-Pca-100268	Procavia capensis	87.73	0.00e+00	765.00
IUUC-Ppe-101425	Prunus persica	42.01	2.00e-67	249.00
IUUC-Pva-103183	Pteropus vampyrus	87.96	0.00e+00	766.00
IUUC-Rno-105097	Rattus norvegicus	87.96	0.00e+00	766.00
IUUC-Sha-107642	Sarcophilus harrisii	87.27	0.00e+00	761.00
IUUC-Smo-108680	Selaginella moellendorffii	35.53	1.00e-61	230.00
IUUC-Sit-110471	Setaria italica	41.18	5.00e-64	239.00
IUUC-Sly-111143	Solanum lycopersicum	33.89	2.00e-33	136.00
IUUC-Stu-111926	Solanum tuberosum	53.01	5.00e-22	96.70
IUUC-Sar-112947	Sorex araneus	100.00	2.00e-174	604.00
IUUC-Sbi-113769	Sorghum bicolor	43.63	1.00e-62	233.00
IUUC-Ssc-115736	Sus scrofa	87.96	0.00e+00	766.00
IUUC-Tgu-117457	Taeniopygia guttata	86.57	0.00e+00	756.00
IUUC-Tru-117760	Takifugu rubripes	79.72	0.00e+00	705.00
IUUC-Tsy-118943	Tarsius syrichta	87.04	0.00e+00	751.00
IUUC-Tni-120081	Tetraodon nigroviridis	80.41	0.00e+00	709.00
IUUC-Tca-121190	Theobroma cacao	40.29	2.00e-70	259.00
IUUC-Tae-123709	Triticum aestivum	45.56	4.00e-66	245.00
IUUC-Tur-126329	Triticum urartu	45.95	3.00e-66	246.00
IUUC-Tbe-127878	Tupaia belangeri	86.35	0.00e+00	738.00
IUUC-Ttr-128985	Tursiops truncatus	87.96	0.00e+00	766.00
IUUC-Vpa-130147	Vicugna pacos	87.73	0.00e+00	764.00
IUUC-Vvi-130935	Vitis vinifera	39.20	2.00e-69	256.00
IUUC-Xtr-132482	Xenopus tropicalis	83.33	0.00e+00	730.00
IUUC-Xma-133929	Xiphophorus maculatus	79.95	0.00e+00	705.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence