iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Opu-083433

Ensembl Protein ID

OPUNC06G02660.5

UniProt Accession

A0A0E0L7P4; A0A0E0L7P4_ORYPU

Protein Name

Coatomer subunit beta'

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
OPUNC06G02660	OPUNC06G02660.1	OPUNC06G02660.1
OPUNC06G02660	OPUNC06G02660.2	OPUNC06G02660.2
OPUNC06G02660	OPUNC06G02660.3	OPUNC06G02660.3
OPUNC06G02660	OPUNC06G02660.4	OPUNC06G02660.4
OPUNC06G02660	OPUNC06G02660.5	OPUNC06G02660.5

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	6.80e-31	105.9	135	176
UBD/Beta-Prp	1.60e-58	199.2	3	248

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf...sd.tllvsGsdDgtikvWDlrtgvllks 38
           gH+ +v+c+++    d ++l++GsdD t kvWD+ t  ++++
   Q: 135  GHQKGVNCVDYftgGDrPYLITGSDDSTAKVWDYQTKSCVQT 176
           8********966*9778*******************999986 PP

UBD/Beta-Prp

   S: 46   rslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfspsgdklvsGshdrtirvwdletgqcleetlsghdgv 139
           +s++  e +v++ kf++++++ v g++D++i+v++++t + v ++++h+d++++++++p+  +++s s+d  i++wd+++g+   ++++gh++ 
   Q: 3    KSFEVSELPVRSAKFISRKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWDKGWMCTQIFEGHSHY 96
           678888999*************************************************************************9999******** PP
   S: 140  vncvvvhpdg.nllvsGslDrtvrlWdlktgkllrtltgghtdsvysls..fdsngkelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrf 230
           v+ v+++p++ n ++s+slDrt ++W+l + +   tl g h++ v++++     ++++l++gs+d+t k+wd+qt++cv+tl+ght n++ v f
   Q: 97   VMQVTFNPKDtNTFASASLDRTTKIWSLGSPDPNFTLDG-HQKGVNCVDyfTGGDRPYLITGSDDSTAKVWDYQTKSCVQTLEGHTHNISAVCF 189
           **************************************9.*********7445566************************************** PP
   S: 231  spnderlvsgssDgsiriWdlrsgdllktlqlhnssvisvavlsfgdnvlvlgsedskvn 290
           +p+  ++++gs+Dg++riW +++  l +tl++  ++v++v +++   + +v g ++++++
   Q: 190  HPELPIIITGSEDGTVRIWHSTTYRLENTLNYGLERVWAVGYMKG-SRRMVIGYDEGTIM 248
           ****************************************99444.45555555555655 PP

Organism

Oryza punctata

Functional Description
(View)

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.

Protein Sequence
(Fasta)

MVKSFEVSEL PVRSAKFISR KQWVVAGADD MFIRVYNYNT MDKVKVFEAH TDYIRCVAVH 60
PTLPYVLSSS DDMLIKLWDW DKGWMCTQIF EGHSHYVMQV TFNPKDTNTF ASASLDRTTK 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TTTTAGTTTA GTCCTTTTTT TCCTCCCACC CTCCTCGTCG CTCCCCCGCC GAGCTCGCGA 60
TCCGATTCGC TTTGCCTCCG CTTCCTCCTC CGCCTCCGCG CTGCGCCGCC GTTGCCGCGG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0968--Cytoplasmic vesicle
KW-0931--ER-Golgi transport
KW-0333--Golgi apparatus
KW-0472--Membrane
KW-0653--Protein transport
KW-1185--Reference proteome
KW-0813--Transport
KW-0853--WD repeat

Interpro

IPR006692--Coatomer_WD-assoc_reg
IPR016453--COPB2
IPR020472--G-protein_beta_WD-40_rep
IPR011990--TPR-like_helical_dom
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF04053--Coatomer_WDAD
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0030663--C:COPI-coated vesicle membrane
GO:0000139--C:Golgi membrane
GO:0030117--C:membrane coat
GO:0005198--F:structural molecule activity
GO:0006886--P:intracellular protein transport
GO:0016192--P:vesicle-mediated transport

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000654	Aegilops tauschii	87.49	0.00e+00	1501.00
IUUC-Afl-008535	Aspergillus flavus	50.82	0.00e+00	841.00
IUUC-Bdi-014102	Brachypodium distachyon	94.37	0.00e+00	1643.00
IUUC-Eeu-035086	Erinaceus europaeus	50.22	1.00e-123	437.00
IUUC-Meu-056174	Macropus eugenii	51.86	2.00e-109	389.00
IUUC-Mac-065544	Musa acuminata	85.15	0.00e+00	1490.00
IUUC-Oba-075760	Oryza barthii	99.30	0.00e+00	1665.00
IUUC-Ogl-077450	Oryza glaberrima	99.06	0.00e+00	1659.00
IUUC-Ogu-078994	Oryza glumaepatula	99.30	0.00e+00	1665.00
IUUC-Oin-079211	Oryza indica	99.18	0.00e+00	1664.00
IUUC-Olo-080731	Oryza longistaminata	99.30	0.00e+00	1664.00
IUUC-Ome-081762	Oryza meridionalis	92.81	0.00e+00	1562.00
IUUC-Oni-082324	Oryza nivara	99.30	0.00e+00	1665.00
IUUC-Oru-084829	Oryza rufipogon	99.30	0.00e+00	1665.00
IUUC-Osa-086026	Oryza sativa	99.18	0.00e+00	1665.00
IUUC-Ppa-095911	Physcomitrella patens	76.62	0.00e+00	1334.00
IUUC-Pyt-104794	Pyrenophora triticirepentis	52.46	0.00e+00	833.00
IUUC-Smo-108695	Selaginella moellendorffii	81.52	0.00e+00	1334.00
IUUC-Sit-110239	Setaria italica	94.72	0.00e+00	1660.00
IUUC-Stu-112906	Solanum tuberosum	80.96	0.00e+00	1401.00
IUUC-Sar-113472	Sorex araneus	56.06	0.00e+00	757.00
IUUC-Tae-125292	Triticum aestivum	92.73	0.00e+00	1621.00
IUUC-Tur-126283	Triticum urartu	86.27	0.00e+00	1494.00
IUUC-Vpa-130037	Vicugna pacos	50.76	2.00e-129	456.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence