iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
TCM_030472	EOY29046	EOY29046
TCM_030472	EOY29047	EOY29047
TCM_030472	EOY29045	EOY29045
TCM_030472	EOY29044	EOY29044

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	2.80e-09	37.9	280	316

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf..sd.tllvsGsdDgtikvWDlrtgv 34
           gHt +vt++af   d +ll+s+s Dg + vW + +g+
   Q: 280  GHTQRVTDMAFfaEDvHLLASASVDGRVFVWKINEGP 316
           8*********9998889**************987765 PP

Organism

Theobroma cacao

Protein Sequence
(Fasta)

MASTGNPNQQ PQVGGGGGGF DMTKLFKPSS GPLLQQQQQQ LHQNLNVIAT PPSPSPSPST 60
TNLTTSPSFP AQSSTPPPPP YLTPSSSYPP PTGPYAFHHP HYLPYPSPPQ HQHPLHPHHH 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CTAAAACCAA AAGCCTTTTT GTCTCTCTTT TTTTTTTTTT TTTTTTTTTT GAAGAAAGAA 60
AGTTCATTGG CGTCCTTGAG TCATCGTCCG GTCTGGGTCA CCCACACGAG AGGAGACTCG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR032401--EDC4_WD40
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF16529--Ge1_WD40

SMART

SM00320--WD40

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000781	Aegilops tauschii	53.27	0.00e+00	1189.00
IUUC-Bdi-014578	Brachypodium distachyon	52.95	0.00e+00	1168.00
IUUC-Gma-044019	Glycine max	65.43	0.00e+00	1460.00
IUUC-Hvu-047656	Hordeum vulgare	53.69	0.00e+00	1199.00
IUUC-Lpe-051585	Leersia perrieri	53.82	0.00e+00	1108.00
IUUC-Mac-065519	Musa acuminata	73.49	0.00e+00	679.00
IUUC-Oba-075696	Oryza barthii	49.95	0.00e+00	769.00
IUUC-Obr-076020	Oryza brachyantha	53.24	0.00e+00	1176.00
IUUC-Ogl-077350	Oryza glaberrima	54.64	0.00e+00	1131.00
IUUC-Ogu-079010	Oryza glumaepatula	53.53	0.00e+00	1169.00
IUUC-Oin-079418	Oryza indica	54.55	0.00e+00	1102.00
IUUC-Olo-080844	Oryza longistaminata	52.09	0.00e+00	1030.00
IUUC-Ome-081610	Oryza meridionalis	53.69	0.00e+00	1183.00
IUUC-Oni-082323	Oryza nivara	54.23	0.00e+00	1118.00
IUUC-Opu-083811	Oryza punctata	50.95	0.00e+00	1108.00
IUUC-Oru-084677	Oryza rufipogon	54.20	0.00e+00	1108.00
IUUC-Osa-085798	Oryza sativa	54.80	0.00e+00	1133.00
IUUC-Ppa-095912	Physcomitrella patens	57.35	2.00e-135	476.00
IUUC-Pop-100004	Populus trichocarpa	70.41	0.00e+00	1613.00
IUUC-Sit-110590	Setaria italica	54.11	0.00e+00	1205.00
IUUC-Sly-111460	Solanum lycopersicum	59.79	0.00e+00	1332.00
IUUC-Sbi-114653	Sorghum bicolor	53.44	0.00e+00	1183.00
IUUC-Tae-125553	Triticum aestivum	53.95	0.00e+00	1196.00
IUUC-Tur-126244	Triticum urartu	50.52	0.00e+00	1079.00
IUUC-Vvi-131361	Vitis vinifera	71.32	0.00e+00	1630.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence