iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Pyt-104446

Ensembl Protein ID

EDU39941

UniProt Accession

B2VR76; ERB1_PYRTR

Genbank Protein ID

EDU39941.1

Protein Name

Ribosome biogenesis protein erb1; Eukaryotic ribosome biogenesis protein 1

Genbank Nucleotide ID

DS231615

Gene Name

erb1; PTRG_00503

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
PTRG_00503	EDU39941	EDU39941

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.60e-13	49.6	431	467

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sdtll.vsGsdDgtikvWDlrtgvl 35
           g++++v+c++  +++++ +sG+dDg +++W+l tg++
   Q: 431  GQEGRVRCVSIdPNGIFvASGGDDGYVRIWELLTGRQ 467
           57899******977775499************99987 PP

Organism

Pyrenophora triticirepentis

Functional Description
(View)

Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.

Protein Sequence
(Fasta)

MSVNPRKRKV VTRPAPEPSD SEGELGDGLL EGILSHSEDD SDNSREEEVD TDASSVIEGL 60
SDEDEEEDED SDSEQIRTEM RNLNTSDGPL RKKKGVPTHD MDLDTAVTEE LEDDEDLKPN 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGTCTGTCA ATCCGCGCAA GAGGAAGGTA GTGACGCGCC CGGCGCCAGA GCCTAGTGAT 60
TCCGAAGGTG AATTAGGCGA CGGCTTGCTT GAGGGCATTC TGTCGCATTC CGAGGACGAT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0853--WD repeat

Interpro

IPR028598--BOP1/Erb1
IPR012953--BOP1_N_dom
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08145--BOP1NT
PF00400--WD40

SMART

SM01035--BOP1NT
SM00320--WD40

Gene Ontology

GO:0005654--C:nucleoplasm
GO:0070545--C:PeBoW complex
GO:0030687--C:preribosome, large subunit precursor
GO:0070180--F:large ribosomal subunit rRNA binding
GO:0042273--P:ribosomal large subunit biogenesis
GO:0006364--P:rRNA processing

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001158	Aegilops tauschii	36.87	1.00e-101	362.00
IUUC-Aml-001507	Ailuropoda melanoleuca	40.60	5.00e-125	439.00
IUUC-Atr-003141	Amborella trichopoda	36.65	7.00e-69	253.00
IUUC-Apl-003545	Anas platyrhynchos	40.31	2.00e-119	420.00
IUUC-Aly-005649	Arabidopsis lyrata	41.60	9.00e-135	472.00
IUUC-Ath-007625	Arabidopsis thaliana	41.25	1.00e-127	448.00
IUUC-Ago-007958	Ashbya gossypii	52.38	0.00e+00	724.00
IUUC-Acl-008344	Aspergillus clavatus	64.99	0.00e+00	849.00
IUUC-Afl-008616	Aspergillus flavus	65.75	0.00e+00	879.00
IUUC-Afu-009083	Aspergillus fumigatus	65.40	0.00e+00	824.00
IUUC-Ani-009365	Aspergillus nidulans	65.09	0.00e+00	860.00
IUUC-Ang-009796	Aspergillus niger	64.38	0.00e+00	875.00
IUUC-Aor-010015	Aspergillus oryzae	65.75	0.00e+00	879.00
IUUC-Ate-010537	Aspergillus terreus	64.88	0.00e+00	909.00
IUUC-Ame-011767	Astyanax mexicanus	50.42	2.00e-66	243.00
IUUC-Bgr-012286	Blumeria graminis	68.66	0.00e+00	945.00
IUUC-Bta-013569	Bos taurus	42.50	3.00e-139	487.00
IUUC-Bci-013820	Botrytis cinerea	63.41	0.00e+00	924.00
IUUC-Bdi-014477	Brachypodium distachyon	40.13	3.00e-130	457.00
IUUC-Bol-016099	Brassica oleracea	40.97	9.00e-134	469.00
IUUC-Bra-017174	Brassica rapa	41.03	1.00e-134	472.00
IUUC-Cel-018201	Caenorhabditis elegans	38.75	2.00e-116	411.00
IUUC-Cja-019009	Callithrix jacchus	43.02	1.00e-83	302.00
IUUC-Cfa-020173	Canis familiaris	38.91	6.00e-124	436.00
IUUC-Cpo-021796	Cavia porcellus	42.50	5.00e-138	483.00
IUUC-Cre-022650	Chlamydomonas reinhardtii	41.84	3.00e-122	430.00
IUUC-Csa-023440	Chlorocebus sabaeus	42.81	8.00e-145	505.00
IUUC-Cin-025782	Ciona intestinalis	43.54	8.00e-149	519.00
IUUC-Csv-026352	Ciona savignyi	41.11	9.00e-139	485.00
IUUC-Cgl-026393	Colletotrichum gloeosporioides	56.11	0.00e+00	753.00
IUUC-Cne-027004	Cryptococcus neoformans	48.15	2.00e-179	620.00
IUUC-Cme-027242	Cyanidioschyzon merolae	33.68	1.00e-108	385.00
IUUC-Dre-028658	Danio rerio	43.30	3.00e-147	513.00
IUUC-Dno-028883	Dasypus novemcinctus	42.81	7.00e-139	486.00
IUUC-Dor-031031	Dipodomys ordii	42.02	4.00e-141	493.00
IUUC-Dse-031443	Dothistroma septosporum	61.29	0.00e+00	832.00
IUUC-Dme-031786	Drosophila melanogaster	41.76	1.00e-146	511.00
IUUC-Eca-033677	Equus caballus	42.02	6.00e-138	482.00
IUUC-Eeu-035310	Erinaceus europaeus	39.07	7.00e-105	372.00
IUUC-Fca-035888	Felis catus	41.71	5.00e-140	489.00
IUUC-Fal-037438	Ficedula albicollis	42.91	3.00e-114	403.00
IUUC-Fox-037973	Fusarium oxysporum	61.41	0.00e+00	924.00
IUUC-Fso-038187	Fusarium solani	67.31	0.00e+00	931.00
IUUC-Gmo-039114	Gadus morhua	39.69	9.00e-131	458.00
IUUC-Ggr-039746	Gaeumannomyces graminis	66.18	0.00e+00	938.00
IUUC-Gga-040631	Gallus gallus	41.81	4.00e-80	289.00
IUUC-Gac-042582	Gasterosteus aculeatus	42.26	4.00e-139	486.00
IUUC-Gma-044215	Glycine max	42.33	4.00e-136	476.00
IUUC-Ggo-045587	Gorilla gorilla	42.65	2.00e-144	504.00
IUUC-Hsa-046319	Homo sapiens	42.65	1.00e-144	504.00
IUUC-Hvu-047526	Hordeum vulgare	39.38	1.00e-122	432.00
IUUC-Itr-048683	Ictidomys tridecemlineatus	42.14	3.00e-139	487.00
IUUC-Kpa-049221	Komagataella pastoris	48.60	0.00e+00	672.00
IUUC-Lch-049640	Latimeria chalumnae	42.79	3.00e-152	530.00
IUUC-Lpe-051135	Leersia perrieri	40.17	1.00e-65	242.00
IUUC-Loc-051930	Lepisosteus oculatus	43.60	4.00e-151	526.00
IUUC-Lma-053290	Leptosphaeria maculans	86.96	0.00e+00	1276.00
IUUC-Laf-053903	Loxodonta africana	38.80	5.00e-119	419.00
IUUC-Mcc-055471	Macaca mulatta	42.65	8.00e-145	505.00
IUUC-Meu-056190	Macropus eugenii	43.60	6.00e-145	506.00
IUUC-Mor-057135	Magnaporthe oryzae	68.20	0.00e+00	908.00
IUUC-Mpo-057475	Magnaporthe poae	65.48	0.00e+00	904.00
IUUC-Mtr-058689	Medicago truncatula	39.04	2.00e-119	421.00
IUUC-Mla-059149	Melampsora laricipopulina	49.40	0.00e+00	625.00
IUUC-Mga-059645	Meleagris gallopavo	37.60	1.00e-45	174.00
IUUC-Mvi-060485	Microbotryum violaceum	46.13	1.00e-158	552.00
IUUC-Mmr-061674	Microcebus murinus	42.50	8.00e-137	479.00
IUUC-Mdo-062973	Monodelphis domestica	43.13	1.00e-150	525.00
IUUC-Mmu-064180	Mus musculus	42.97	4.00e-144	503.00
IUUC-Mac-064535	Musa acuminata	38.01	6.00e-79	287.00
IUUC-Mpu-066406	Mustela putorius furo	42.02	5.00e-142	496.00
IUUC-Mlu-067795	Myotis lucifugus	42.65	1.00e-132	465.00
IUUC-Nfi-068516	Neosartorya fischeri	63.15	0.00e+00	801.00
IUUC-Ncr-068767	Neurospora crassa	66.17	0.00e+00	857.00
IUUC-Opr-071084	Ochotona princeps	39.66	3.00e-52	197.00
IUUC-Ont-071614	Oreochromis niloticus	42.99	4.00e-150	523.00
IUUC-Oba-075980	Oryza barthii	40.46	4.00e-66	243.00
IUUC-Obr-076799	Oryza brachyantha	40.79	8.00e-130	456.00
IUUC-Ogl-077134	Oryza glaberrima	40.79	4.00e-124	436.00
IUUC-Ogu-078655	Oryza glumaepatula	39.31	3.00e-115	407.00
IUUC-Oin-079654	Oryza indica	40.79	5.00e-124	436.00
IUUC-Olo-080706	Oryza longistaminata	40.75	5.00e-66	243.00
IUUC-Ome-081716	Oryza meridionalis	41.21	3.00e-66	244.00
IUUC-Oni-082508	Oryza nivara	38.05	2.00e-110	391.00
IUUC-Opu-083707	Oryza punctata	40.75	6.00e-66	243.00
IUUC-Oru-084453	Oryza rufipogon	40.75	5.00e-66	243.00
IUUC-Osa-085811	Oryza sativa	40.63	9.00e-124	435.00
IUUC-Ola-087361	Oryzias latipes	44.05	9.00e-150	522.00
IUUC-Oga-088015	Otolemur garnettii	41.86	3.00e-145	506.00
IUUC-Oar-090058	Ovis aries	50.00	4.00e-47	180.00
IUUC-Ptr-090631	Pan troglodytes	39.55	7.00e-57	212.00
IUUC-Pan-092306	Papio anubis	42.74	7.00e-144	502.00
IUUC-Pma-094622	Petromyzon marinus	44.71	3.00e-155	540.00
IUUC-Pno-094794	Phaeosphaeria nodorum	78.54	0.00e+00	1192.00
IUUC-Ppa-095528	Physcomitrella patens	35.51	3.00e-73	267.00
IUUC-Pfo-096682	Poecilia formosa	42.95	1.00e-152	531.00
IUUC-Pab-097939	Pongo abelii	42.76	1.00e-129	455.00
IUUC-Pop-099043	Populus trichocarpa	41.59	1.00e-122	431.00
IUUC-Pca-100333	Procavia capensis	41.39	2.00e-137	481.00
IUUC-Ppe-102078	Prunus persica	41.55	1.00e-128	452.00
IUUC-Pgr-103525	Puccinia graminis	48.94	1.00e-165	575.00
IUUC-Ptt-103929	Puccinia triticina	48.60	6.00e-159	553.00
IUUC-Pte-104029	Pyrenophora teres	98.46	0.00e+00	1425.00
IUUC-Rno-105248	Rattus norvegicus	42.50	3.00e-144	503.00
IUUC-Sce-106381	Saccharomyces cerevisiae	51.18	0.00e+00	721.00
IUUC-Sha-106519	Sarcophilus harrisii	43.92	6.00e-151	525.00
IUUC-Sja-107908	Schizosaccharomyces japonicus	44.13	7.00e-154	535.00
IUUC-Spo-108071	Schizosaccharomyces pombe	47.31	2.00e-163	567.00
IUUC-Smo-109604	Selaginella moellendorffii	41.41	2.00e-115	408.00
IUUC-Sit-110551	Setaria italica	41.26	5.00e-129	453.00
IUUC-Sly-110970	Solanum lycopersicum	42.77	6.00e-69	253.00
IUUC-Stu-112593	Solanum tuberosum	42.56	1.00e-135	475.00
IUUC-Sar-113123	Sorex araneus	46.69	6.00e-58	215.00
IUUC-Sbi-113945	Sorghum bicolor	39.91	2.00e-128	451.00
IUUC-Sre-115188	Sporisorium reilianum	44.72	2.00e-161	561.00
IUUC-Ssc-115352	Sus scrofa	42.97	4.00e-141	493.00
IUUC-Tru-117685	Takifugu rubripes	43.30	4.00e-151	526.00
IUUC-Tni-119982	Tetraodon nigroviridis	43.13	5.00e-146	509.00
IUUC-Tca-121664	Theobroma cacao	41.29	3.00e-134	470.00
IUUC-Tre-122229	Trichoderma reesei	66.52	0.00e+00	820.00
IUUC-Tvi-122576	Trichoderma virens	66.27	0.00e+00	827.00
IUUC-Tae-124110	Triticum aestivum	39.44	7.00e-117	412.00
IUUC-Tur-126781	Triticum urartu	37.34	5.00e-97	347.00
IUUC-Tme-127080	Tuber melanosporum	64.41	0.00e+00	867.00
IUUC-Ttr-128514	Tursiops truncatus	38.05	3.00e-83	301.00
IUUC-Uma-129556	Ustilago maydis	44.69	1.00e-158	551.00
IUUC-Vda-129715	Verticillium dahliae	66.27	0.00e+00	908.00
IUUC-Vvi-131211	Vitis vinifera	39.94	1.00e-121	429.00
IUUC-Xma-133883	Xiphophorus maculatus	42.48	3.00e-147	513.00
IUUC-Yli-134438	Yarrowia lipolytica	51.33	0.00e+00	701.00
IUUC-Zma-135341	Zea mays	36.69	5.00e-118	416.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence