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Basic Information Integrated Annotations

Tag Content
iUUCD ID IUUC-Ath-007484
Ensembl Protein ID AT3G09790.1
UniProt Accession Q39256; UBQ8_ARATH
Genbank Protein ID AAA68879.1; AAF23256.1; AAF23307.1; AEE74813.1; ANM63421.1
Protein Name Polyubiquitin 8; Ubiquitin-related 1; Ubiquitin-related 2; Ubiquitin-related 3; Ubiquitin-related 4; Ubiquitin-related 5; Ubiquitin-related 6; Ubiquitin-related 7; Ubiquitin-related 8
Genbank Nucleotide ID L05917; AC015985; AC016661; CP002686; CP002686
Gene Name UBQ8; At3g09790; F11F8_38; F8A24.16
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
AT3G09790 AT3G09790.1 AT3G09790.1
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
TRANSFAC
Protein-protein Interaction
iRefIndexPINAHINTMentha
Protein Expression/Proteomics
GPMDB
Status Unreviewed
Classification
Family E-Value Score Start End
ULD/UBL/NEDD8 2.50e-221 717.4 79 154
ULD/UDP/UBQ/UBQ_PIM 2.20e-160 521.8 79 150
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   ULD/UBL/NEDD8

   S: 1    mlikvktLtgkeieieieesdtierikerveekeGiPPsqqrliyaGkqleddktaadynlekgsvLhLvLaLrGG 76
    m+i+v+tLtgk+i++e+++sdti+++k+++++keGi P qqrli+aGkqled++t+adyn++k+s+LhLvL+L GG
   Q: 79 MQIFVQTLTGKTITLEVKSSDTIDNVKAKIQDKEGILPRQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLCGG 154
    89************************************************************************98 PP
   


   ULD/UDP/UBQ/UBQ_PIM

   S: 1    mkltvktlkgkefelevseddtveelKekiakesgvppeqqkLIyaGkiLkDdttLselgikdgsvvhlvvk 72
    m+++v tl+gk+++lev+++dt+ ++K+ki+++ g+ p qq+LI+aGk+L+D +tL +++i+++s++hlv++
   Q: 79 MQIFVQTLTGKTITLEVKSSDTIDNVKAKIQDKEGILPRQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 150
    99********************************************************************87 PP
   

Organism Arabidopsis thaliana
Functional Description
(View)

Functional Description



     Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-11-linked is involved in ERAD (endoplasmic reticulum-associated degradation) and in cell-cycle regulation; Lys-29-linked is involved in lysosomal degradation; Lys-33-linked is involved in kinase modification; Lys-48-linked is involved in protein degradation via the proteasome; Lys-63-linked is involved in endocytosis, and DNA-damage responses. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling (By similarity).
Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-11-linked is involved in ERAD (endoplasmic reticulum-associated degradation) and in cell-cycle regulation; Lys-29-linked is involved in lysosomal degradation; Lys-33-linked is involved in kinase modification; Lys-48-linked is involved in protein degradation via the proteasome; Lys-63-linked is involved in endocytosis, and DNA-damage responses. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling (By similarity).
Protein Sequence
(Fasta)
MTIQIYAKTL TEKTITLDVE TSDSIHNVKA KIQNKEGIPL DQQRLIFAGK QLEDGLTLAD 60
YNIQKESTLH LVLRLRGGMQ IFVQTLTGKT ITLEVKSSDT IDNVKAKIQD KEGILPRQQR 120
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Protein Fasta Sequence



>IUUC-Ath-007484|ULD,NEDD8;ULD,UBQ_PIM|Arabidopsis thaliana
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Nucleotide Sequence
(Fasta)
AACTGAGAAA CGCTTTTACT CAAACCCTAA ATCGATCGTT CTGCAAAAGT TTTCTGTGAA 60
GTACTACTAC TCTCTCTCAA GGTATTTGTT TCTTCTATCT CTTCTCATCA TCTTTTTTCG 120
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Nucleotide Fasta Sequence



>IUUC-Ath-007484|ULD,NEDD8;ULD,UBQ_PIM|Arabidopsis thaliana
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-1017--Isopeptide bond
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0833--Ubl conjugation pathway

Interpro

IPR019956--Ubiquitin
IPR029071--Ubiquitin-rel_dom
IPR000626--Ubiquitin_dom

PROSITE

PS50053--UBIQUITIN_2

Pfam

PF00240--ubiquitin

PRINTS

PR00348--UBIQUITIN

SMART

SM00213--UBQ

Gene Ontology

GO:0005618--C:cell wall
GO:0005634--C:nucleus
GO:0005773--C:vacuole
GO:0006511--P:ubiquitin-dependent protein catabolic process

KEGG ath:AT3G09790
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Aly-006184 Arabidopsis lyrata 86.06 0.00e+00 1057.00
Created Date 25-Jun-2017

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