iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Smo-109379

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Katanin p80 WD40 repeat-containing subunit B1 homolog

Genbank Nucleotide ID

GL377593

Gene Name

SELMODRAFT_442850

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
SELMODRAFT_442850	EFJ23110	EFJ23110

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.80e-37	126.4	144	182
UBD/Beta-Prp	3.60e-57	194.5	17	252

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvllk 37
           gHt +v c++f +d + +vsG+ D+++k+WDl+ g+l++
   Q: 144  GHTRGVKCVKFsPDgRWIVSGGEDNVVKLWDLTAGKLIH 182
           8***********9999*******************9876 PP

UBD/Beta-Prp

   S: 8    hhksvitcvkf.spdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfspsgd 107
           +h s ++c+k+ ++++++l+tg++d+++  w + +++++ slsgh+++v +v f+  + + v g+  +tik+wdl+  k+v+tl+gh ++  s++f+p g+
   Q: 17   AHGSDVNCLKIgKKSSRVLVTGGEDHKVNMWAIGKPNAILSLSGHTSGVESVAFDAAEVLVVAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGE 117
           67788999***9**********************************************99999************************************** PP
   S: 108  klvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsfdsngkelvsgsldgtvklwd 208
           +++sGs d  +++wd++ + c++ t +gh++ v cv+++pdg+ +vsG+ D++v+lWdl  gkl+++++  h+ ++++l+f++  + l+sgs d+tvk++d
   Q: 118  FFASGSLDTNLKIWDIRRKGCIH-TYKGHTRGVKCVKFSPDGRWIVSGGEDNVVKLWDLTAGKLIHDFKY-HEAQIQCLDFHPHEFLLASGSADKTVKFYD 216
           ***********************.********************************************97.****************************** PP
   S: 209  lqtgecvrtlnghtdnvksvrfspnderlvsgssDg 244
           l+t e + +    t+ v+++ f p++  +vs+++++
   Q: 217  LETFELIGSSGPETSGVRVMGFNPDGRTIVSATQEN 252
           ********************************9765 PP

Organism

Selaginella moellendorffii

Functional Description
(View)

May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays.

Protein Sequence
(Fasta)

MRLSMKRQIF GGEEFVAHGS DVNCLKIGKK SSRVLVTGGE DHKVNMWAIG KPNAILSLSG 60
HTSGVESVAF DAAEVLVVAG AASGTIKLWD LEEAKIVRTL TGHRSNCISV DFHPFGEFFA 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGCGGCTAT CGATGAAGCG GCAGATCTTC GGGGGAGGTA TGCTCTAGGA TGCTAGCAAG 60
ATACATTTCG ATGGGAGGAA GAAATCTCGG TCGGCAGCTC TTACGGGGAG CCCTAAGATC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0206--Cytoskeleton
KW-0493--Microtubule
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR011042--6-blade_b-propeller_TolB-like
IPR020472--G-protein_beta_WD-40_rep
IPR026962--Katanin_bsu1
IPR028021--Katanin_C-terminal
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF13925--Katanin_con80
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0008352--C:katanin complex
GO:0005874--C:microtubule
GO:0051013--P:microtubule severing

KEGG

smo:SELMODRAFT_442850

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000954	Aegilops tauschii	68.51	2.00e-137	483.00
IUUC-Atr-002899	Amborella trichopoda	72.19	2.00e-163	568.00
IUUC-Bta-012527	Bos taurus	54.27	1.00e-101	362.00
IUUC-Bdi-014552	Brachypodium distachyon	70.78	4.00e-139	488.00
IUUC-Cja-019706	Callithrix jacchus	54.27	5.00e-101	361.00
IUUC-Csv-025962	Ciona savignyi	49.66	1.00e-86	311.00
IUUC-Dre-028215	Danio rerio	48.66	1.00e-100	360.00
IUUC-Dno-029314	Dasypus novemcinctus	53.92	7.00e-101	360.00
IUUC-Dor-030482	Dipodomys ordii	54.27	5.00e-102	364.00
IUUC-Gmo-038692	Gadus morhua	52.23	2.00e-97	349.00
IUUC-Gac-042004	Gasterosteus aculeatus	51.20	6.00e-93	334.00
IUUC-Hvu-047649	Hordeum vulgare	60.67	1.00e-156	546.00
IUUC-Itr-048697	Ictidomys tridecemlineatus	54.27	8.00e-102	363.00
IUUC-Lch-049674	Latimeria chalumnae	54.83	1.00e-104	373.00
IUUC-Loc-052623	Lepisosteus oculatus	54.01	1.00e-97	350.00
IUUC-Mpo-057540	Magnaporthe poae	30.21	4.00e-26	112.00
IUUC-Mac-065100	Musa acuminata	70.08	3.00e-162	565.00
IUUC-Mlu-067692	Myotis lucifugus	54.27	4.00e-101	361.00
IUUC-Nle-070051	Nomascus leucogenys	53.92	4.00e-100	358.00
IUUC-Ocu-074644	Oryctolagus cuniculus	54.27	1.00e-101	363.00
IUUC-Ogu-079022	Oryza glumaepatula	67.83	3.00e-137	481.00
IUUC-Olo-080245	Oryza longistaminata	68.88	2.00e-161	562.00
IUUC-Ome-081239	Oryza meridionalis	80.20	2.00e-159	555.00
IUUC-Osa-086267	Oryza sativa	68.47	4.00e-138	484.00
IUUC-Ola-087483	Oryzias latipes	47.35	2.00e-88	319.00
IUUC-Oga-087964	Otolemur garnettii	54.27	1.00e-101	362.00
IUUC-Oar-089483	Ovis aries	53.92	3.00e-99	355.00
IUUC-Ppa-095379	Physcomitrella patens	70.43	3.00e-161	561.00
IUUC-Pfo-096755	Poecilia formosa	52.23	1.00e-94	340.00
IUUC-Pab-097564	Pongo abelii	54.27	9.00e-101	360.00
IUUC-Ppe-101697	Prunus persica	64.15	2.00e-132	466.00
IUUC-Stu-112462	Solanum tuberosum	65.12	2.00e-154	538.00
IUUC-Sar-112953	Sorex araneus	46.93	3.00e-56	212.00
IUUC-Tni-120903	Tetraodon nigroviridis	49.66	6.00e-87	314.00
IUUC-Tae-125668	Triticum aestivum	75.71	5.00e-156	544.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence