iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Si000092m.g	Si000112m	Si000112m
Si000092m.g	Si000092m	Si000092m
Si000092m.g	Si000158m	Si000158m
Si000092m.g	Si000096m	Si000096m
Si000092m.g	Si000094m	Si000094m
Si000092m.g	Si000253m	Si000253m

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.80e-26	92.0	513	546
UBD/Beta-Prp	2.60e-42	146.0	471	721

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf..sd.tl.lvsGsdDgtikvWDlr 31
           H+++v+++af  ++  l +v+++dD+ ikvWD++
   Q: 513  HSGGVNDIAFsrPNkQLcVVTCGDDKLIKVWDMH 546
           9**********9774334799***********75 PP

UBD/Beta-Prp

   S: 12   vitcvkfspdksllatgsrdgtikvwdvttgkl...lrslsgheaevtavkfspdgk..ilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfsp.. 104
            i+ v++spd++l+ ++++ + i ++ +++++    + +++ h+++v+++ fs+  k    vt+++D++ikvwd+   k + t++ghe+ v+s+  +   
   Q: 471  SINRVTWSPDGELIGVAFTKHLIHLHAYQQPNEtrhVLEIEAHSGGVNDIAFSRPNKqlCVVTCGDDKLIKVWDMHGQK-LFTFEGHEAPVYSICPHHke 569
           5777999************************998888899*************98888999**************8766.569**********9888765 PP
   S: 105  sgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGsl....DrtvrlWdlktgkllrtl...tgghtdsvyslsfdsngkelvs 197
           s +++ s+s d  i+ w  ++     + +++  ++ +++ ++ dg  l+s+++    D+ +  W+ + g++ rt    ++   +    ++fd  ++++++
   Q: 570  SIQFIFSTSLDGKIKAWLYDNVGSRVDYDAPG-KWCTTMLYSADGTRLFSCGTgkegDSYLVEWNESEGSIKRTYsgfRKRSAGVAGVVQFDTAQNHFLA 668
           55***************888866666466555.588899999999888888864445777778888999999999666554566666777********** PP
   S: 198  gsldgtvklwdlqtgecvrtlnght..dnvksvrfspnderlvsgssDgsiri 248
           +++d+++k+wd+ +++++   ++        ++rf +++++l++++ D+  +i
   Q: 669  AGEDNQIKFWDVDNTNMLTCTEADGglPALPRLRFNKEGNLLAVTTVDNGFKI 721
           *************9987655444442244456777788888888888877666 PP

Organism

Setaria italica

Protein Sequence
(Fasta)

MEAPVSCRPI SSRLVCYSSP IAPNRPRATR SLASRAHPPP PRPPCRGAPA ELRGARIEHR 60
ARVHAAAAAM SSLSRELVFL ILQFLDEEKF KETVHKLEQE SGFFFNMKYF EEKVHAGEWD 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGAAGCCC CCGTCTCGTG CCGTCCCATC TCGTCTCGTC TCGTCTGCTA CTCCTCCCCA 60
ATCGCGCCGA ACCGCCCCCG CGCCACGCGA TCTCTAGCGT CTCGCGCGCA CGTCGCCCTC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR006595--CTLH_C
IPR006594--LisH
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS50897--CTLH
PS50896--LISH
PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00668--CTLH
SM00667--LisH
SM00320--WD40

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000072	Aegilops tauschii	81.96	0.00e+00	1778.00
IUUC-Aly-005503	Arabidopsis lyrata	71.05	0.00e+00	1603.00
IUUC-Ath-006901	Arabidopsis thaliana	71.23	0.00e+00	1612.00
IUUC-Bdi-014677	Brachypodium distachyon	88.70	0.00e+00	1997.00
IUUC-Bol-016487	Brassica oleracea	69.28	0.00e+00	1541.00
IUUC-Bra-016798	Brassica rapa	69.10	0.00e+00	1533.00
IUUC-Gma-042940	Glycine max	72.97	0.00e+00	1686.00
IUUC-Hvu-047370	Hordeum vulgare	87.29	0.00e+00	2032.00
IUUC-Lpe-050951	Leersia perrieri	87.93	0.00e+00	1924.00
IUUC-Mtr-058168	Medicago truncatula	72.94	0.00e+00	1688.00
IUUC-Mac-064999	Musa acuminata	75.44	0.00e+00	1789.00
IUUC-Oba-075415	Oryza barthii	90.02	0.00e+00	2057.00
IUUC-Obr-076726	Oryza brachyantha	88.61	0.00e+00	2047.00
IUUC-Ogl-077810	Oryza glaberrima	90.02	0.00e+00	2057.00
IUUC-Ogu-078090	Oryza glumaepatula	90.02	0.00e+00	2057.00
IUUC-Oin-080158	Oryza indica	88.96	0.00e+00	2050.00
IUUC-Olo-080271	Oryza longistaminata	88.16	0.00e+00	2006.00
IUUC-Ome-081965	Oryza meridionalis	90.28	0.00e+00	2046.00
IUUC-Oni-082421	Oryza nivara	89.84	0.00e+00	2056.00
IUUC-Opu-083912	Oryza punctata	90.02	0.00e+00	2053.00
IUUC-Oru-085201	Oryza rufipogon	90.02	0.00e+00	2057.00
IUUC-Osa-086161	Oryza sativa	90.02	0.00e+00	2057.00
IUUC-Pop-099188	Populus trichocarpa	71.65	0.00e+00	1632.00
IUUC-Ppe-102061	Prunus persica	71.37	0.00e+00	1648.00
IUUC-Sly-111169	Solanum lycopersicum	70.08	0.00e+00	1286.00
IUUC-Stu-112369	Solanum tuberosum	69.85	0.00e+00	1283.00
IUUC-Sbi-113873	Sorghum bicolor	95.85	0.00e+00	2159.00
IUUC-Tae-125312	Triticum aestivum	87.18	0.00e+00	2004.00
IUUC-Tur-126477	Triticum urartu	82.58	0.00e+00	1974.00
IUUC-Vvi-131297	Vitis vinifera	73.75	0.00e+00	1680.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence