iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Sly-110881

Ensembl Protein ID

Solyc12g013800.1.1

UniProt Accession

K4DCR5; K4DCR5_SOLLC

Protein Name

Uncharacterized protein

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Solyc12g013800.1	Solyc12g013800.1.1	Solyc12g013800.1.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/U-box	3.80e-07	30.8	65	126
E3 activity/RING/RING	6.80e-08	33.7	68	115

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 5    eflCpIslelMrdPvvlpsGitydrssIekwlasggk........tcPvtrqplteedlvPn 58
            f C I l+  +dPvv+ +G+ y   +I kwl+   +        +cPv+++++++++lvP 
   Q: 65   CFDCNICLDSAHDPVVTLCGHLYCWPCIYKWLQVESSgpgsvenpKCPVCKAHISNSSLVPL 126
           79******************************6555556899999***************96 PP

E3 activity/RING/RING

   S: 1    CaiCledfkdgplvlpCgHvfhadClqkw...pglknssskefrCPlCr 46
           C iCl++  d p+v+ CgH+++  C++kw     +   s  + +CP+C+
   Q: 68   CNICLDSAHD-PVVTLCGHLYCWPCIYKWlqvESSGPGSVENPKCPVCK 115
           99********.9999**************887444445667779****6 PP

Organism

Solanum lycopersicum

Protein Sequence
(Fasta)

MLVYLVLYSF PLSFSSLVVL PILLWGFSSI DFMTITRVGS DEDISVDKKN SVPFPTSASD 60
NESSCFDCNI CLDSAHDPVV TLCGHLYCWP CIYKWLQVES SGPGSVENPK CPVCKAHISN 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGTTAGGTA AGACTATTTA CTTAAAAGGG TAGTTGTAAA AATTAATAAG ACTTAAATTT 60
TGTACTCCCC TTCAATAGGT GGGGCGACAT ATGTTTTCGG AAGATTTAAT CATGCGATAT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0472--Membrane
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0812--Transmembrane
KW-1133--Transmembrane helix
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR018957--Znf_C3HC4_RING-type
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD
IPR017907--Znf_RING_CS

PROSITE

PS00518--ZF_RING_1
PS50089--ZF_RING_2

Pfam

PF00097--zf-C3HC4

SMART

SM00184--RING

Gene Ontology

GO:0036513--C:Derlin-1 retrotranslocation complex
GO:0016021--C:integral component of membrane
GO:1904264--F:ubiquitin protein ligase activity involved in ERAD pathway
GO:0044390--F:ubiquitin-like protein conjugating enzyme binding
GO:0008270--F:zinc ion binding
GO:0071712--P:ER-associated misfolded protein catabolic process
GO:0042787--P:protein ubiquitination involved in ubiquitin-dependent protein catabolic process

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Hvu-047276	Hordeum vulgare	34.39	3.00e-28	117.00
IUUC-Mac-065357	Musa acuminata	38.40	9.00e-32	129.00
IUUC-Obr-076866	Oryza brachyantha	43.35	2.00e-25	108.00
IUUC-Ogu-078280	Oryza glumaepatula	35.90	2.00e-25	108.00
IUUC-Oin-079906	Oryza indica	35.90	2.00e-25	108.00
IUUC-Olo-081070	Oryza longistaminata	35.90	2.00e-25	108.00
IUUC-Ome-081915	Oryza meridionalis	35.90	2.00e-25	108.00
IUUC-Oni-082950	Oryza nivara	35.90	2.00e-25	108.00
IUUC-Opu-083549	Oryza punctata	39.42	6.00e-26	110.00
IUUC-Osa-085904	Oryza sativa	35.90	2.00e-25	108.00
IUUC-Pop-099944	Populus trichocarpa	50.64	1.00e-60	225.00
IUUC-Pte-104025	Pyrenophora teres	32.41	1.00e-09	58.20
IUUC-Pyt-104699	Pyrenophora triticirepentis	32.41	1.00e-09	57.80
IUUC-Stu-112640	Solanum tuberosum	91.06	2.00e-128	450.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence