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Tag Content
iUUCD ID IUUC-Bra-016862
Ensembl Protein ID Bra000157.1-P
UniProt Accession M4C7H9; M4C7H9_BRARP
Protein Name Eukaryotic translation initiation factor 3 subunit F; eIF-3-epsilon
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
Bra000157 Bra000157.1 Bra000157.1-P
Status Unreviewed
Classification
Family Identity E-Value Score Source Orthology
DUB/JAMM 39.54 4.00e-50 196.00 IUUC-Hsa-046860
Active Site
Position(s) Description Evidence
N/A N/A N/A
Organism Brassica rapa
Functional Description
(View)

Functional Description


     Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.
 Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.
Protein Sequence
(Fasta)
MAATNEHTVL QFVTPSSTAS TTTQVLTARI HPLVIFNVCD CFVRRPDSAE RVIGTLLGSI 60
LPDGTVDIRN SYAVPHNESS DQVAVDIDYH HNMLASHLKV NPKEVIVGWY STGAGVNGGS 120
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Protein Fasta Sequence


>IUUC-Bra-016862|DUB,JAMM|Brassica rapa
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Nucleotide Sequence
(Fasta)
ATGGCGGCAA CAAACGAGCA CACCGTCTTG CAATTCGTGA CTCCGTCATC GACGGCCTCC 60
ACAACCACCC AAGTGCTCAC AGCAAGGATC CACCCTCTCG TTATCTTCAA CGTCTGCGAT 120
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Nucleotide Fasta Sequence


>IUUC-Bra-016862|DUB,JAMM|Brassica rapa
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Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0396--Initiation factor
KW-0648--Protein biosynthesis
KW-1185--Reference proteome
Interpro

IPR027531--eIF3f
IPR000555--JAMM/MPN+_dom
IPR024969--Rpn11/EIF3F_C
Pfam

PF01398--JAB
PF13012--MitMem_reg
SMART

SM00232--JAB_MPN
Gene Ontology

GO:0016282--C:eukaryotic 43S preinitiation complex
GO:0033290--C:eukaryotic 48S preinitiation complex
GO:0005852--C:eukaryotic translation initiation factor 3 complex
GO:0003743--F:translation initiation factor activity
GO:0001731--P:formation of translation preinitiation complex
GO:0006446--P:regulation of translational initiation
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-001150 Aegilops tauschii 63.36 5.00e-95 340.00
IUUC-Aml-001527 Ailuropoda melanoleuca 39.54 1.00e-53 203.00
IUUC-Atr-002686 Amborella trichopoda 69.62 8.00e-107 379.00
IUUC-Apl-003977 Anas platyrhynchos 37.27 2.00e-41 161.00
IUUC-Aca-004335 Anolis carolinensis 39.16 1.00e-54 206.00
IUUC-Aly-005945 Arabidopsis lyrata 92.49 6.00e-142 496.00
IUUC-Ath-007045 Arabidopsis thaliana 91.81 4.00e-139 486.00
IUUC-Acl-008365 Aspergillus clavatus 38.83 2.00e-41 162.00
IUUC-Afl-008742 Aspergillus flavus 38.10 7.00e-41 160.00
IUUC-Afu-009030 Aspergillus fumigatus 39.05 4.00e-42 164.00
IUUC-Ani-009212 Aspergillus nidulans 38.10 3.00e-41 162.00
IUUC-Ang-009712 Aspergillus niger 38.10 6.00e-41 161.00
IUUC-Aor-009885 Aspergillus oryzae 38.46 4.00e-42 164.00
IUUC-Ate-010315 Aspergillus terreus 37.73 9.00e-40 157.00
IUUC-Ame-010801 Astyanax mexicanus 50.62 3.00e-20 91.70
IUUC-Bgr-011982 Blumeria graminis 36.82 1.00e-40 160.00
IUUC-Bta-012804 Bos taurus 39.54 2.00e-53 202.00
IUUC-Bci-013891 Botrytis cinerea 36.23 2.00e-33 136.00
IUUC-Bdi-014328 Brachypodium distachyon 66.17 2.00e-94 338.00
IUUC-Bol-015446 Brassica oleracea 98.98 1.00e-152 531.00
IUUC-Cel-018171 Caenorhabditis elegans 28.77 7.00e-24 103.00
IUUC-Cja-019335 Callithrix jacchus 39.54 2.00e-53 202.00
IUUC-Cfa-020138 Canis familiaris 39.16 4.00e-53 201.00
IUUC-Cpo-022109 Cavia porcellus 36.90 1.00e-42 166.00
IUUC-Cre-022664 Chlamydomonas reinhardtii 40.36 3.00e-55 207.00
IUUC-Csa-023994 Chlorocebus sabaeus 39.54 2.00e-53 202.00
IUUC-Cho-024351 Choloepus hoffmanni 34.48 3.00e-31 128.00
IUUC-Cin-025801 Ciona intestinalis 37.50 1.00e-47 182.00
IUUC-Csv-025805 Ciona savignyi 37.88 1.00e-47 183.00
IUUC-Cgl-026643 Colletotrichum gloeosporioides 33.57 2.00e-34 139.00
IUUC-Cne-026868 Cryptococcus neoformans 34.51 9.00e-27 113.00
IUUC-Cme-027328 Cyanidioschyzon merolae 26.64 1.00e-18 86.70
IUUC-Dre-028085 Danio rerio 39.92 1.00e-53 202.00
IUUC-Dno-030099 Dasypus novemcinctus 39.54 2.00e-53 202.00
IUUC-Dor-030324 Dipodomys ordii 35.74 5.00e-43 167.00
IUUC-Dse-031314 Dothistroma septosporum 37.99 8.00e-42 164.00
IUUC-Dme-031926 Drosophila melanogaster 38.15 3.00e-47 181.00
IUUC-Ete-032569 Echinops telfairi 37.26 7.00e-49 186.00
IUUC-Eca-033502 Equus caballus 37.26 1.00e-47 182.00
IUUC-Eeu-034883 Erinaceus europaeus 32.42 3.00e-21 94.00
IUUC-Fca-035873 Felis catus 39.54 1.00e-53 202.00
IUUC-Fal-036921 Ficedula albicollis 38.78 2.00e-53 201.00
IUUC-Fox-037765 Fusarium oxysporum 32.27 4.00e-27 115.00
IUUC-Fso-038240 Fusarium solani 32.62 2.00e-28 119.00
IUUC-Gmo-038864 Gadus morhua 38.78 3.00e-53 201.00
IUUC-Ggr-039862 Gaeumannomyces graminis 32.86 1.00e-28 120.00
IUUC-Gga-040952 Gallus gallus 38.78 4.00e-53 201.00
IUUC-Gac-041677 Gasterosteus aculeatus 39.62 6.00e-56 210.00
IUUC-Gma-043061 Glycine max 77.32 2.00e-116 411.00
IUUC-Ggo-045591 Gorilla gorilla 39.54 2.00e-53 202.00
IUUC-Hsa-046860 Homo sapiens 39.54 2.00e-53 202.00
IUUC-Hvu-047410 Hordeum vulgare 66.89 1.00e-51 194.00
IUUC-Itr-048211 Ictidomys tridecemlineatus 39.92 4.00e-54 204.00
IUUC-Lch-049410 Latimeria chalumnae 51.54 1.00e-35 142.00
IUUC-Lpe-051102 Leersia perrieri 73.26 7.00e-103 366.00
IUUC-Loc-052016 Lepisosteus oculatus 36.12 9.00e-42 163.00
IUUC-Lma-053157 Leptosphaeria maculans 35.61 6.00e-41 160.00
IUUC-Laf-054568 Loxodonta africana 39.54 3.00e-53 202.00
IUUC-Mcc-054613 Macaca mulatta 39.54 2.00e-53 202.00
IUUC-Mor-057104 Magnaporthe oryzae 31.67 1.00e-29 123.00
IUUC-Mtr-058445 Medicago truncatula 76.45 4.00e-124 436.00
IUUC-Mla-059038 Melampsora laricipopulina 32.65 1.00e-29 123.00
IUUC-Mga-059548 Meleagris gallopavo 37.44 8.00e-44 169.00
IUUC-Mvi-060520 Microbotryum violaceum 28.39 2.00e-18 85.90
IUUC-Mdo-062376 Monodelphis domestica 39.16 2.00e-53 202.00
IUUC-Mmu-063254 Mus musculus 39.54 9.00e-54 203.00
IUUC-Mac-065635 Musa acuminata 66.67 2.00e-100 358.00
IUUC-Mpu-066314 Mustela putorius furo 39.54 1.00e-53 202.00
IUUC-Mlu-067512 Myotis lucifugus 39.16 5.00e-54 204.00
IUUC-Nfi-068262 Neosartorya fischeri 39.05 5.00e-42 164.00
IUUC-Ncr-068872 Neurospora crassa 32.62 6.00e-31 127.00
IUUC-Nle-070118 Nomascus leucogenys 39.54 2.00e-53 202.00
IUUC-Opr-071228 Ochotona princeps 39.21 3.00e-45 174.00
IUUC-Ont-072600 Oreochromis niloticus 39.16 3.00e-55 207.00
IUUC-Oan-073584 Ornithorhynchus anatinus 37.89 8.00e-45 172.00
IUUC-Ocu-074542 Oryctolagus cuniculus 39.54 5.00e-54 204.00
IUUC-Oba-075923 Oryza barthii 72.28 7.00e-105 373.00
IUUC-Obr-076313 Oryza brachyantha 72.87 4.00e-101 360.00
IUUC-Ogl-076932 Oryza glaberrima 72.28 7.00e-105 373.00
IUUC-Ogu-078152 Oryza glumaepatula 72.28 7.00e-105 373.00
IUUC-Oin-079528 Oryza indica 72.28 7.00e-105 373.00
IUUC-Olo-080401 Oryza longistaminata 72.28 7.00e-105 373.00
IUUC-Ome-081553 Oryza meridionalis 71.91 2.00e-104 371.00
IUUC-Oni-082090 Oryza nivara 72.01 4.00e-105 374.00
IUUC-Opu-083583 Oryza punctata 73.64 3.00e-102 364.00
IUUC-Oru-084492 Oryza rufipogon 72.28 7.00e-105 373.00
IUUC-Osa-085383 Oryza sativa 72.28 7.00e-105 373.00
IUUC-Ola-086835 Oryzias latipes 39.16 1.00e-55 209.00
IUUC-Olu-087716 Ostreococcus lucimarinus 37.50 3.00e-40 157.00
IUUC-Oga-088886 Otolemur garnettii 39.16 2.00e-53 202.00
IUUC-Oar-090079 Ovis aries 39.54 1.00e-53 202.00
IUUC-Ptr-091457 Pan troglodytes 39.54 2.00e-53 202.00
IUUC-Pan-092317 Papio anubis 36.26 2.00e-28 118.00
IUUC-Psi-093129 Pelodiscus sinensis 35.69 4.00e-45 174.00
IUUC-Pma-094488 Petromyzon marinus 39.54 3.00e-54 204.00
IUUC-Pno-095049 Phaeosphaeria nodorum 36.20 7.00e-42 164.00
IUUC-Ppa-095341 Physcomitrella patens 60.45 9.00e-94 335.00
IUUC-Pfo-096286 Poecilia formosa 39.16 5.00e-55 207.00
IUUC-Pab-097765 Pongo abelii 39.54 2.00e-53 202.00
IUUC-Pop-099131 Populus trichocarpa 78.16 2.00e-122 431.00
IUUC-Pca-100524 Procavia capensis 31.86 3.00e-29 121.00
IUUC-Ppe-101934 Prunus persica 79.04 2.00e-126 444.00
IUUC-Pva-102577 Pteropus vampyrus 39.54 5.00e-54 204.00
IUUC-Pgr-103521 Puccinia graminis 33.60 4.00e-31 128.00
IUUC-Pte-104304 Pyrenophora teres 36.92 9.00e-43 167.00
IUUC-Pyt-104563 Pyrenophora triticirepentis 36.92 1.00e-42 166.00
IUUC-Rno-105717 Rattus norvegicus 39.92 3.00e-54 205.00
IUUC-Sha-107190 Sarcophilus harrisii 38.61 2.00e-50 192.00
IUUC-Sja-107918 Schizosaccharomyces japonicus 34.42 2.00e-35 142.00
IUUC-Spo-108355 Schizosaccharomyces pombe 36.56 7.00e-38 150.00
IUUC-Smo-109374 Selaginella moellendorffii 63.53 3.00e-99 353.00
IUUC-Sit-110119 Setaria italica 72.08 1.00e-104 372.00
IUUC-Sly-111570 Solanum lycopersicum 72.85 7.00e-110 389.00
IUUC-Stu-112308 Solanum tuberosum 72.85 5.00e-116 409.00
IUUC-Sar-113515 Sorex araneus 39.58 1.00e-16 79.00
IUUC-Sbi-114605 Sorghum bicolor 71.70 4.00e-103 367.00
IUUC-Sre-114906 Sporisorium reilianum 32.83 1.00e-36 146.00
IUUC-Tgu-117087 Taeniopygia guttata 37.89 1.00e-43 169.00
IUUC-Tru-117700 Takifugu rubripes 39.54 1.00e-56 212.00
IUUC-Tni-120470 Tetraodon nigroviridis 38.78 6.00e-55 206.00
IUUC-Tca-121109 Theobroma cacao 78.69 1.00e-117 415.00
IUUC-Tre-122095 Trichoderma reesei 32.27 2.00e-27 116.00
IUUC-Tvi-122580 Trichoderma virens 32.27 2.00e-27 116.00
IUUC-Tae-125129 Triticum aestivum 69.17 2.00e-100 357.00
IUUC-Tur-126658 Triticum urartu 62.50 5.00e-90 323.00
IUUC-Tme-127043 Tuber melanosporum 37.18 1.00e-40 159.00
IUUC-Tbe-127927 Tupaia belangeri 39.54 1.00e-53 202.00
IUUC-Ttr-129231 Tursiops truncatus 39.54 6.00e-54 204.00
IUUC-Uma-129578 Ustilago maydis 33.21 9.00e-36 143.00
IUUC-Vda-129730 Verticillium dahliae 32.86 2.00e-33 136.00
IUUC-Vvi-130968 Vitis vinifera 76.90 6.00e-122 429.00
IUUC-Xtr-132203 Xenopus tropicalis 38.02 2.00e-51 195.00
IUUC-Xma-133972 Xiphophorus maculatus 39.16 5.00e-55 207.00
IUUC-Yli-134553 Yarrowia lipolytica 32.33 3.00e-29 121.00
IUUC-Zma-134941 Zea mays 70.19 2.00e-93 334.00
Created Date 25-Jun-2017

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