iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Smo-109443

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Ubiquitin-protein ligase, PUB13

Genbank Nucleotide ID

GL377637

Gene Name

PUB13-1; SELMODRAFT_182197

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
SELMODRAFT_182197	EFJ12670	EFJ12670

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/U-box	1.10e-33	115.8	257	329

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 2    vpeeflCpIslelMrdPvvlpsGitydrssIekwlasggktcPvtrqplteedlvPnltlrrliqawceenss 74
           +pe+f+CpIslelM+dPv++++G+ty+rs+I+kwl+ g+ktcP+t+q+l +  l+Pn++lr+li +wce+n++
   Q: 257  IPEDFRCPISLELMKDPVIVATGQTYERSYIQKWLDAGHKTCPITQQTLPHLVLTPNYVLRSLICQWCETNGI 329
           8*********************************************************************987 PP

Organism

Selaginella moellendorffii

Protein Sequence
(Fasta)

MAGQGEFQEL VETLIGLLNE ISSLGDYARS HRKECTNLAR RLKLLAPLLE EAREASSLDS 60
LRPFHDLKLV LHSAKDLLSL CHKGSKIFLI MKREGIASSF QSVTADLEHV LDSLPYNSLN 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGCCGGAC AAGGTGAGTT CCAGGAGCTG GTGGAGACTC TCATTGGGCT GCTCAACGAG 60
ATATCATCCC TGGGGGACTA CGCCAGATCG CACCGCAAGG AATGCACCAA TCTCGCCCGC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0436--Ligase
KW-1185--Reference proteome

Interpro

IPR011989--ARM-like
IPR016024--ARM-type_fold
IPR000225--Armadillo
IPR011987--ATPase_V1-cplx_hsu_C
IPR003613--Ubox_domain
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50176--ARM_REPEAT
PS51698--U_BOX

Pfam

PF00514--Arm
PF04564--U-box

SMART

SM00185--ARM
SM00504--Ubox

Gene Ontology

GO:0016874--F:ligase activity
GO:0004842--F:ubiquitin-protein transferase activity

KEGG

smo:SELMODRAFT_182197

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000439	Aegilops tauschii	52.59	1.00e-146	512.00
IUUC-Ath-007618	Arabidopsis thaliana	52.47	3.00e-173	600.00
IUUC-Bol-015254	Brassica oleracea	52.16	2.00e-170	591.00
IUUC-Bra-017857	Brassica rapa	52.32	9.00e-172	596.00
IUUC-Ete-032405	Echinops telfairi	48.61	8.00e-17	80.50
IUUC-Gma-043496	Glycine max	55.57	0.00e+00	630.00
IUUC-Mtr-058332	Medicago truncatula	52.24	1.00e-169	589.00
IUUC-Oba-075184	Oryza barthii	50.32	8.00e-160	556.00
IUUC-Obr-076590	Oryza brachyantha	49.37	4.00e-157	547.00
IUUC-Ogl-077386	Oryza glaberrima	50.32	8.00e-160	556.00
IUUC-Ogu-078326	Oryza glumaepatula	50.32	1.00e-159	556.00
IUUC-Oin-079687	Oryza indica	50.16	9.00e-159	553.00
IUUC-Olo-081001	Oryza longistaminata	50.32	2.00e-159	555.00
IUUC-Ome-081417	Oryza meridionalis	50.39	9.00e-163	566.00
IUUC-Oni-082379	Oryza nivara	50.16	1.00e-158	552.00
IUUC-Opu-083774	Oryza punctata	50.16	4.00e-161	560.00
IUUC-Oru-084885	Oryza rufipogon	50.00	4.00e-159	554.00
IUUC-Osa-085946	Oryza sativa	49.84	3.00e-157	548.00
IUUC-Pan-091769	Papio anubis	46.58	9.00e-15	73.60
IUUC-Ppa-095383	Physcomitrella patens	54.19	0.00e+00	630.00
IUUC-Pop-099229	Populus trichocarpa	55.43	2.00e-176	611.00
IUUC-Ppe-102057	Prunus persica	53.36	8.00e-151	526.00
IUUC-Ptt-103922	Puccinia triticina	28.57	7.00e-10	57.00
IUUC-Sit-110369	Setaria italica	53.16	7.00e-146	509.00
IUUC-Sbi-113843	Sorghum bicolor	48.84	2.00e-148	519.00
IUUC-Tca-121269	Theobroma cacao	54.62	3.00e-172	597.00
IUUC-Tur-126448	Triticum urartu	52.61	4.00e-151	528.00
IUUC-Tme-127103	Tuber melanosporum	35.58	2.00e-20	93.60
IUUC-Vvi-131729	Vitis vinifera	53.59	2.00e-168	584.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence