iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Aly-005730

Ensembl Protein ID

Al_scaffold_0003_3187

UniProt Accession

D7LB66; D7LB66_ARALL

Genbank Protein ID

EFH62119.1

Protein Name

Ribosome biogenesis protein BOP1 homolog

Genbank Nucleotide ID

GL348715

Gene Name

ARALYDRAFT_673990

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Al_scaffold_0003_3187	Al_scaffold_0003_3187	Al_scaffold_0003_3187

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.00e-07	32.7	521	544

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 14   tllvsGsdDgtikvWDlrtgvllk 37
             ++ Gs Dg++++W++ tg++lk
   Q: 521  QWIALGSTDGSVRIWEVETGRCLK 544
           569*******************97 PP

Organism

Arabidopsis lyrata

Functional Description
(View)

Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit.

Protein Sequence
(Fasta)

MSSGISTYQE SYSPGFLSGY QDPRPKQHVP GFLSSDEAFT SRFGTTSISN FKTKVARTKP 60
RRQKDSEFQT NPSKKPSLAS SSSHESVQDE KKEDVAKKED IAMIEFSMSN LLGNLARTSD 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGTCATCCG GAATATCCAC ATATCAAGAA TCGTATTCCC CAGGGTTTCT GTCTGGTTAT 60
CAAGATCCAA GACCGAAACA GCATGTACCT GGATTCTTAT CCTCTGATGA AGCTTTTACA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0853--WD repeat

Interpro

IPR028598--BOP1/Erb1
IPR012953--BOP1_N_dom
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08145--BOP1NT
PF00400--WD40

SMART

SM01035--BOP1NT
SM00320--WD40

Gene Ontology

GO:0005730--C:nucleolus
GO:0005654--C:nucleoplasm
GO:0030687--C:preribosome, large subunit precursor
GO:0043021--F:ribonucleoprotein complex binding
GO:0000466--P:maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000463--P:maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

KEGG

aly:ARALYDRAFT_673990

Orthology

iUUCD ID

Species

Identity

E-value

Score

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence