iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Sbi-114336

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

RING-type E3 ubiquitin transferase

Genbank Nucleotide ID

CM000763

Gene Name

SORBI_004G245100

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Sb04g028560	Sb04g028560.1	Sb04g028560.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/U-box	3.00e-33	114.5	49	120

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 2    vpeeflCpIslelMrdPvvlpsGitydrssIekwlasggktcPvtrqplteedlvPnltlrrliqawceens 73
           +p+ flCpIsle+MrdPv++p+Gitydr s+e wl++g++tcPvt +pl+ edl+Pn++ rr+iq+wc +n+
   Q: 49   IPSNFLCPISLEMMRDPVTAPTGITYDRDSVEGWLERGHSTCPVTARPLRAEDLIPNHATRRMIQEWCVANR 120
           89******************************************************************9986 PP

Organism

Sorghum bicolor

Protein Sequence
(Fasta)

MVTPVSRYRL RPRSVRVAVS EIPLATRRTR QPPQLVPGAA AAVATEPAIP SNFLCPISLE 60
MMRDPVTAPT GITYDRDSVE GWLERGHSTC PVTARPLRAE DLIPNHATRR MIQEWCVANR 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGTCACGC CGGTGTCCCG CTACCGCCTT CGCCCGCGGT CGGTGCGTGT GGCGGTGTCG 60
GAGATCCCGC TCGCCACGAG GCGGACGAGG CAGCCGCCGC AGCTCGTGCC GGGGGCGGCG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0808--Transferase

Interpro

IPR011989--ARM-like
IPR016024--ARM-type_fold
IPR003613--Ubox_domain
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS51698--U_BOX

Pfam

PF04564--U-box

SMART

SM00504--Ubox

Gene Ontology

GO:0004842--F:ubiquitin-protein transferase activity

KEGG

sbi:SORBI_04g028560

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000169	Aegilops tauschii	75.41	3.00e-95	340.00
IUUC-Aly-006171	Arabidopsis lyrata	39.37	5.00e-75	274.00
IUUC-Ath-007692	Arabidopsis thaliana	38.69	4.00e-71	261.00
IUUC-Gma-042846	Glycine max	45.50	2.00e-90	325.00
IUUC-Hvu-047616	Hordeum vulgare	73.98	4.00e-161	560.00
IUUC-Mtr-058526	Medicago truncatula	37.75	3.00e-76	278.00
IUUC-Mac-065672	Musa acuminata	44.90	2.00e-94	338.00
IUUC-Oba-075080	Oryza barthii	75.00	8.00e-88	316.00
IUUC-Obr-076534	Oryza brachyantha	71.49	1.00e-142	498.00
IUUC-Ogl-077723	Oryza glaberrima	74.21	3.00e-137	480.00
IUUC-Ogu-078447	Oryza glumaepatula	73.67	6.00e-138	483.00
IUUC-Ome-081665	Oryza meridionalis	72.02	5.00e-144	503.00
IUUC-Oni-082092	Oryza nivara	73.97	3.00e-137	480.00
IUUC-Opu-083482	Oryza punctata	69.83	1.00e-148	518.00
IUUC-Oru-084868	Oryza rufipogon	74.21	3.00e-137	480.00
IUUC-Osa-085472	Oryza sativa	74.21	3.00e-137	480.00
IUUC-Sit-109812	Setaria italica	86.36	0.00e+00	633.00
IUUC-Sly-111577	Solanum lycopersicum	44.55	1.00e-97	349.00
IUUC-Tca-121201	Theobroma cacao	45.81	1.00e-98	352.00
IUUC-Tae-124311	Triticum aestivum	73.98	4.00e-153	533.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence