iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Pop-099982

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Ubiquitin conjugating-like enzyme family protein

Genbank Nucleotide ID

CM000340

Gene Name

POPTRDRAFT_556640; POPTR_0004s18090g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0004s18090	POPTR_0004s18090.1	POPTR_0004s18090.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E2/UBC	6.70e-55	185.8	5	139
UBD/UBC-like/UBD_UBC	1.90e-71	239.7	5	142

Active Site

Position(s)	Description	Evidence
85	Glycyl thioester intermediate	{ECO:0000256\|PROSITE-ProRule:PRU00388}

Domain Profile

E2/UBC

   S: 1    RlkkelkelekdppegisakpvdesdltewevlilGpedtpYeggvFkleiefpedYPfkPPkvkfltkifhPnvyenGkvClsilkeeek 91
           R+ kelk+l++dpp+++sa+pv e d+++w+++i+Gp+d+pY+ggvF ++i+fp+dYPfkPPkv f tk+fhPn+++nG++Cl+ilk  e+
   Q: 5    RILKELKDLQRDPPTSCSAGPVAE-DMFHWQATIIGPNDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGNICLDILK--EQ 92
           899*********************.9************************************************************9..** PP
   S: 92   Wspalsvesvllsiqsllaepnpesplneeaaellkknreeykkkvr 138
           Wspal++++vllsi+sll++pnp++pl  e+a+++k+++ +y++ +r
   Q: 93   WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKADKIKYESSAR 139
           *******************************************9886 PP

UBD/UBC-like/UBD_UBC

   S: 1    rikkelkdllrdeeaqisadlvdddlfelratiagppdspyeggvffltiklptdypfkppkvafitkiyhpninsngsicldilrsqwsa 91
           ri kelkdl+rd+++ +sa++v +d+f+++ati+gp+dspy ggvf +ti++p dypfkppkvaf tk++hpninsng icldil++qws+
   Q: 5    RILKELKDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGNICLDILKEQWSP 95
           899**************************************************************************************** PP
   S: 92   altlskvllslcslladaepddplvaeiariyktdkekykriarewt 138
           alt+skvlls+csll+d++pddplv+eia++ k+dk ky+  ar wt
   Q: 96   ALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKADKIKYESSARSWT 142
           **********************************************8 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MASKRILKEL KDLQRDPPTS CSAGPVAEDM FHWQATIIGP NDSPYAGGVF LVTIHFPPDY 60
PFKPPKVAFR TKVFHPNINS NGNICLDILK EQWSPALTIS KVLLSICSLL TDPNPDDPLV 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ACAAACCTCT CTTCTCCAGC ATTGCCAATT CCTCTATTAA ATACACCACC ATCTTCCCTT 60
CTGCCAGCAT CCATATCTTG GTTTTCTTCT CTAGCTTCGC AATCATCAGT CTTGAATTAC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0067--ATP-binding
KW-0181--Complete proteome
KW-0547--Nucleotide-binding
KW-1185--Reference proteome
KW-0833--Ubl conjugation pathway

Interpro

IPR000608--UBQ-conjugat_E2
IPR023313--UBQ-conjugating_AS
IPR016135--UBQ-conjugating_enzyme/RWD

PROSITE

PS00183--UBIQUITIN_CONJUGAT_1
PS50127--UBIQUITIN_CONJUGAT_2

Pfam

PF00179--UQ_con

Gene Ontology

GO:0005524--F:ATP binding

KEGG

pop:POPTR_0004s18090g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Gma-042765	Glycine max	97.30	1.00e-84	304.00
IUUC-Lpe-051317	Leersia perrieri	90.54	2.00e-81	293.00
IUUC-Mtr-058645	Medicago truncatula	94.59	2.00e-83	300.00
IUUC-Oba-075063	Oryza barthii	89.86	2.00e-80	290.00
IUUC-Obr-076691	Oryza brachyantha	89.86	8.00e-81	292.00
IUUC-Ogu-078890	Oryza glumaepatula	89.86	2.00e-80	290.00
IUUC-Olo-080885	Oryza longistaminata	89.86	2.00e-80	290.00
IUUC-Ome-081920	Oryza meridionalis	89.86	2.00e-80	290.00
IUUC-Oni-082139	Oryza nivara	89.86	2.00e-80	290.00
IUUC-Oru-084951	Oryza rufipogon	89.86	2.00e-80	290.00
IUUC-Osa-085525	Oryza sativa	89.86	2.00e-80	290.00
IUUC-Ppe-101710	Prunus persica	97.30	9.00e-85	304.00
IUUC-Stu-112749	Solanum tuberosum	93.24	2.00e-81	293.00
IUUC-Tca-121241	Theobroma cacao	96.62	3.00e-84	302.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence