iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Mtr-058517

Ensembl Protein ID

KEH28874

UniProt Accession

A0A072UGM4; A0A072UGM4_MEDTR

Genbank Protein ID

KEH28874.1

Protein Name

PHD finger alfin-like protein

Genbank Nucleotide ID

CM001220

Gene Name

MTR_4g015830

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
MTR_4g015830	KEH28874	KEH28874

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/PHD	4.30e-08	34.6	185	234

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/PHD

   S: 2    kvClvCgeggedekslveCekCrewfHpaClklsveeelpnsekwiCpkCr 52
           + C  Cg +++ ++  + C++C++w+H +C+k++   + ++ +++ Cp+C+
   Q: 185  TLCGSCGGNYNADEFWIGCDICERWYHGKCVKIT-PAKAESIKQYKCPSCS 234
           68999*****************************.888888889******6 PP

Organism

Medicago truncatula

Protein Sequence
(Fasta)

MEMASSPRTV EEIFKDFSSR RDGIVRALTQ DVDEFYALCD PDKDNLCLYG HTNESWEVTL 60
PAEEVPPELP EPALGINFAR DGMNRRDWLS LVAVHSDSWL LSVAFYLGAR LNRNERKRLF 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GCAAATCCAA TTCCTCTTAA TATAAACCCT AAATAGGAAA CACACTATAT AACTAACTAC 60
ACACACTTAT ATTAATTTTC TATATTATTT CCAACCATAG TCTTCTCTCT CTTCTTATTA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR021998--Alfin
IPR019786--Zinc_finger_PHD-type_CS
IPR011011--Znf_FYVE_PHD
IPR001965--Znf_PHD
IPR019787--Znf_PHD-finger
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS01359--ZF_PHD_1
PS50016--ZF_PHD_2

Pfam

PF12165--Alfin
PF00628--PHD

SMART

SM00249--PHD

Gene Ontology

GO:0008270--F:zinc ion binding
GO:0006355--P:regulation of transcription, DNA-templated

KEGG

mtr:MTR_4g015830

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001165	Aegilops tauschii	57.75	1.00e-70	258.00
IUUC-Atr-002475	Amborella trichopoda	81.43	4.00e-99	353.00
IUUC-Ang-009560	Aspergillus niger	55.56	2.00e-06	47.40
IUUC-Bdi-014258	Brachypodium distachyon	64.44	2.00e-77	281.00
IUUC-Gma-043376	Glycine max	89.17	8.00e-101	358.00
IUUC-Hvu-047100	Hordeum vulgare	64.58	1.00e-78	285.00
IUUC-Lpe-050738	Leersia perrieri	69.75	1.00e-84	305.00
IUUC-Mac-064648	Musa acuminata	81.86	7.00e-101	358.00
IUUC-Oba-075021	Oryza barthii	62.74	4.00e-75	273.00
IUUC-Ogl-077422	Oryza glaberrima	68.49	3.00e-78	283.00
IUUC-Ogu-079021	Oryza glumaepatula	62.74	4.00e-75	273.00
IUUC-Oin-079801	Oryza indica	68.91	1.00e-78	285.00
IUUC-Olo-080963	Oryza longistaminata	51.63	9.00e-33	132.00
IUUC-Ome-081881	Oryza meridionalis	68.49	3.00e-78	284.00
IUUC-Oni-082314	Oryza nivara	68.91	1.00e-78	285.00
IUUC-Opu-083359	Oryza punctata	68.91	2.00e-78	284.00
IUUC-Oru-085108	Oryza rufipogon	66.81	1.00e-74	271.00
IUUC-Olu-087829	Ostreococcus lucimarinus	63.31	5.00e-42	163.00
IUUC-Ppa-095899	Physcomitrella patens	66.27	3.00e-80	290.00
IUUC-Ppe-101614	Prunus persica	88.28	4.00e-97	346.00
IUUC-Sce-106445	Saccharomyces cerevisiae	30.16	2.00e-03	37.00
IUUC-Smo-108937	Selaginella moellendorffii	51.46	2.00e-51	194.00
IUUC-Sly-111710	Solanum lycopersicum	81.09	6.00e-91	326.00
IUUC-Stu-111932	Solanum tuberosum	81.09	2.00e-92	330.00
IUUC-Ssc-116137	Sus scrofa	40.82	3.00e-08	53.50
IUUC-Tca-121204	Theobroma cacao	86.19	8.00e-98	348.00
IUUC-Tae-124170	Triticum aestivum	64.85	4.00e-77	280.00
IUUC-Vvi-130845	Vitis vinifera	86.36	1.00e-104	371.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence