iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
Protein-protein Interaction
iRefIndex	PINA	HINT	Mentha
Post-translational Modifications (PTMs)
dbPPT
Protein Expression/Proteomics
GPMDB

Status

Reviewed

Details

Family	Domain	References (PMIDs)
E3 activity/RING/U-box	U-box	14657406; 18552232

Classification

Family	E-value	Score	Start	End
E3 activity/RING/U-box	1.30e-28	99.7	12	80

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 2    vpeeflCpIslelMrdPvvlpsGitydrssIekwlasggktcPvtrqplteedlvPnltlrrliqawce 70
           vp++f+CpIsl++Mr Pv l++G+tydr+sI++wl+ g++tcP t+q l+ +d+vPnltl+rli+ w +
   Q: 12   VPSFFKCPISLDVMRSPVSLCTGVTYDRASIQRWLDGGNNTCPATMQLLKTKDFVPNLTLQRLINIWSD 80
           8******************************************************************86 PP

Organism

Arabidopsis thaliana

Functional Description
(View)

Functions as an E3 ubiquitin ligase.

Protein Sequence
(Fasta)

MGRDETETYI TVPSFFKCPI SLDVMRSPVS LCTGVTYDRA SIQRWLDGGN NTCPATMQLL 60
KTKDFVPNLT LQRLINIWSD SIGRRHNGDS PVLNPPSGRE VPTKEEVNVL LERLMSLENL 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CAGAGTTTGT TTTAAGTAAC ACAAATATTA TAACATTGCT TTTGTAATCA TTTGTTTTTA 60
AATTTCATTC ATAAAAAAAG TACTAAAAAC AGGACATTAT ATGGACCAAA CCCATGTGCT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0808--Transferase
KW-0833--Ubl conjugation pathway

Interpro

IPR011989--ARM-like
IPR016024--ARM-type_fold
IPR003613--Ubox_domain
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS51698--U_BOX

Pfam

PF04564--U-box

SMART

SM00504--Ubox

Gene Ontology

GO:0009506--C:plasmodesma
GO:0070696--F:transmembrane receptor protein serine/threonine kinase binding
GO:0004842--F:ubiquitin-protein transferase activity
GO:0016567--P:protein ubiquitination
GO:0010200--P:response to chitin

KEGG

ath:AT3G18710

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aly-006554	Arabidopsis lyrata	89.83	0.00e+00	693.00
IUUC-Bdi-014371	Brachypodium distachyon	69.05	8.00e-31	127.00
IUUC-Bol-015963	Brassica oleracea	76.29	5.00e-153	533.00
IUUC-Bra-017611	Brassica rapa	74.25	4.00e-165	573.00
IUUC-Lpe-050910	Leersia perrieri	76.81	8.00e-30	123.00
IUUC-Obr-076177	Oryza brachyantha	76.81	1.00e-29	122.00
IUUC-Ogl-077051	Oryza glaberrima	79.37	1.00e-27	116.00
IUUC-Ogu-078852	Oryza glumaepatula	76.81	1.00e-30	127.00
IUUC-Oin-079861	Oryza indica	76.81	1.00e-30	127.00
IUUC-Olo-080339	Oryza longistaminata	79.37	2.00e-27	115.00
IUUC-Oni-083066	Oryza nivara	76.81	1.00e-30	127.00
IUUC-Opu-083818	Oryza punctata	76.81	2.00e-30	126.00
IUUC-Oru-085038	Oryza rufipogon	76.81	2.00e-30	126.00
IUUC-Osa-086178	Oryza sativa	76.81	2.00e-30	126.00
IUUC-Psi-093878	Pelodiscus sinensis	32.14	2.00e-07	50.10
IUUC-Sit-110583	Setaria italica	76.81	9.00e-30	124.00
IUUC-Sbi-114135	Sorghum bicolor	76.81	6.00e-30	124.00
IUUC-Tae-123322	Triticum aestivum	75.00	3.00e-30	125.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence