iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Csv-026352

UUCD1 version

UUC-CiS-00272

Ensembl Protein ID

ENSCSAVP00000011376.1

UniProt Accession

H2Z1B4; H2Z1B4_CIOSA

Protein Name

Ribosome biogenesis protein BOP1 homolog

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSCSAVG00000006653.1	ENSCSAVT00000011508.1	ENSCSAVP00000011375.1
ENSCSAVG00000006653.1	ENSCSAVT00000011509.1	ENSCSAVP00000011376.1
ENSCSAVG00000006653.1	ENSCSAVT00000011510.1	ENSCSAVP00000011377.1
ENSCSAVG00000006653.1	ENSCSAVT00000011511.1	ENSCSAVP00000011378.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.00e-13	50.9	305	343

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf..sdtllvsGsdDgtikvWDlrtgvllk 37
           gH++ v+ ++   ++  l+sGsdDg ++vW+++t ++++
   Q: 305  GHQAMVRTISVdaTGQWLASGSDDGIVRVWEVSTARCVR 343
           566667777777555789******************987 PP

Organism

Ciona savignyi

Functional Description
(View)

Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit.

Protein Sequence
(Fasta)

DQKVELEAEI LKQNEDHDTS DEEDSRNTVG NIPMQWYDDF PHIGYNLDGK PIAKPIRNKD 60
ELDKFLNKMD NPEYWRTIFD KTTGRDHVLT QEELTLINRV QKGSFYDASY DPYEPYVDFF 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TTTTAACGAC AGGACAAAAA TGAAGCAAAA GAAGAGACCT TTAATTGAGG ATCCAGTTGT 60
GGGCGATAAC GAGGTAAGCC GGCATGTGGT TATACGGTAG GGCGTTAGAC TCGGGCGGGA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0853--WD repeat

Interpro

IPR028598--BOP1/Erb1
IPR012953--BOP1_N_dom
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08145--BOP1NT
PF00400--WD40

SMART

SM01035--BOP1NT
SM00320--WD40

Gene Ontology

GO:0005730--C:nucleolus
GO:0005654--C:nucleoplasm
GO:0030687--C:preribosome, large subunit precursor
GO:0043021--F:ribonucleoprotein complex binding
GO:0000466--P:maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000463--P:maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001158	Aegilops tauschii	42.16	2.00e-121	428.00
IUUC-Aml-001507	Ailuropoda melanoleuca	53.53	0.00e+00	652.00
IUUC-Atr-003141	Amborella trichopoda	43.49	3.00e-79	287.00
IUUC-Apl-003545	Anas platyrhynchos	54.77	0.00e+00	629.00
IUUC-Aly-005649	Arabidopsis lyrata	43.23	7.00e-142	496.00
IUUC-Ath-007625	Arabidopsis thaliana	43.32	7.00e-140	489.00
IUUC-Ago-007958	Ashbya gossypii	41.78	9.00e-150	522.00
IUUC-Acl-008344	Aspergillus clavatus	41.00	1.00e-135	475.00
IUUC-Afl-008616	Aspergillus flavus	40.57	4.00e-136	477.00
IUUC-Afu-009083	Aspergillus fumigatus	41.93	3.00e-131	461.00
IUUC-Ani-009365	Aspergillus nidulans	41.91	4.00e-142	496.00
IUUC-Ang-009796	Aspergillus niger	41.33	5.00e-135	473.00
IUUC-Aor-010015	Aspergillus oryzae	40.57	4.00e-136	477.00
IUUC-Ate-010537	Aspergillus terreus	40.79	4.00e-138	483.00
IUUC-Ame-011767	Astyanax mexicanus	53.85	1.00e-82	297.00
IUUC-Bgr-012286	Blumeria graminis	41.25	4.00e-137	480.00
IUUC-Bta-013569	Bos taurus	56.25	0.00e+00	705.00
IUUC-Bci-013820	Botrytis cinerea	41.43	7.00e-132	462.00
IUUC-Bdi-014477	Brachypodium distachyon	42.61	3.00e-141	493.00
IUUC-Bol-016099	Brassica oleracea	43.64	8.00e-144	502.00
IUUC-Bra-017174	Brassica rapa	43.64	7.00e-143	500.00
IUUC-Cel-018201	Caenorhabditis elegans	41.17	7.00e-130	456.00
IUUC-Cja-019009	Callithrix jacchus	61.60	5.00e-141	493.00
IUUC-Cfa-020173	Canis familiaris	54.31	2.00e-123	434.00
IUUC-Cpo-021796	Cavia porcellus	53.65	0.00e+00	695.00
IUUC-Cre-022650	Chlamydomonas reinhardtii	44.34	2.00e-140	491.00
IUUC-Csa-023440	Chlorocebus sabaeus	56.25	0.00e+00	714.00
IUUC-Cin-025782	Ciona intestinalis	73.55	0.00e+00	959.00
IUUC-Cgl-026393	Colletotrichum gloeosporioides	38.67	2.00e-111	395.00
IUUC-Cne-027004	Cryptococcus neoformans	43.01	1.00e-151	528.00
IUUC-Cme-027242	Cyanidioschyzon merolae	50.56	3.00e-56	211.00
IUUC-Dre-028658	Danio rerio	60.28	0.00e+00	777.00
IUUC-Dno-028883	Dasypus novemcinctus	54.95	0.00e+00	705.00
IUUC-Dor-031031	Dipodomys ordii	55.70	0.00e+00	717.00
IUUC-Dse-031443	Dothistroma septosporum	39.67	9.00e-136	475.00
IUUC-Dme-031786	Drosophila melanogaster	46.15	0.00e+00	628.00
IUUC-Eca-033677	Equus caballus	55.93	0.00e+00	702.00
IUUC-Eeu-035310	Erinaceus europaeus	52.06	3.00e-154	536.00
IUUC-Fca-035888	Felis catus	54.50	0.00e+00	693.00
IUUC-Fal-037438	Ficedula albicollis	52.62	5.00e-157	545.00
IUUC-Fox-037973	Fusarium oxysporum	41.44	1.00e-145	508.00
IUUC-Fso-038187	Fusarium solani	41.68	8.00e-145	506.00
IUUC-Gmo-039114	Gadus morhua	52.40	0.00e+00	642.00
IUUC-Ggr-039746	Gaeumannomyces graminis	41.93	5.00e-149	520.00
IUUC-Gga-040631	Gallus gallus	50.72	4.00e-103	366.00
IUUC-Gac-042582	Gasterosteus aculeatus	57.80	0.00e+00	693.00
IUUC-Gma-044215	Glycine max	41.39	6.00e-133	466.00
IUUC-Ggo-045587	Gorilla gorilla	56.14	0.00e+00	715.00
IUUC-Hsa-046319	Homo sapiens	56.25	0.00e+00	715.00
IUUC-Hvu-047526	Hordeum vulgare	42.38	7.00e-138	482.00
IUUC-Itr-048683	Ictidomys tridecemlineatus	55.45	0.00e+00	698.00
IUUC-Kpa-049221	Komagataella pastoris	41.08	1.00e-143	501.00
IUUC-Lch-049640	Latimeria chalumnae	60.19	0.00e+00	780.00
IUUC-Lpe-051135	Leersia perrieri	41.94	1.00e-135	475.00
IUUC-Loc-051930	Lepisosteus oculatus	60.06	0.00e+00	769.00
IUUC-Lma-053290	Leptosphaeria maculans	40.03	2.00e-129	454.00
IUUC-Laf-053903	Loxodonta africana	58.56	6.00e-128	449.00
IUUC-Mcc-055471	Macaca mulatta	56.09	0.00e+00	709.00
IUUC-Meu-056190	Macropus eugenii	54.95	0.00e+00	694.00
IUUC-Mor-057135	Magnaporthe oryzae	42.55	2.00e-139	488.00
IUUC-Mpo-057475	Magnaporthe poae	41.15	2.00e-139	488.00
IUUC-Mtr-058689	Medicago truncatula	41.13	1.00e-73	269.00
IUUC-Mla-059149	Melampsora laricipopulina	43.38	9.00e-153	532.00
IUUC-Mga-059645	Meleagris gallopavo	45.02	2.00e-57	213.00
IUUC-Mvi-060485	Microbotryum violaceum	43.03	1.00e-132	466.00
IUUC-Mmr-061674	Microcebus murinus	56.14	0.00e+00	686.00
IUUC-Mdo-062973	Monodelphis domestica	55.13	0.00e+00	716.00
IUUC-Mmu-064180	Mus musculus	55.29	0.00e+00	711.00
IUUC-Mac-064535	Musa acuminata	46.56	6.00e-90	323.00
IUUC-Mpu-066406	Mustela putorius furo	61.87	2.00e-141	494.00
IUUC-Mlu-067795	Myotis lucifugus	56.25	0.00e+00	680.00
IUUC-Nfi-068516	Neosartorya fischeri	41.48	2.00e-123	434.00
IUUC-Ncr-068767	Neurospora crassa	41.16	1.00e-125	442.00
IUUC-Opr-071084	Ochotona princeps	58.73	2.00e-85	307.00
IUUC-Ont-071614	Oreochromis niloticus	56.25	0.00e+00	739.00
IUUC-Oba-075980	Oryza barthii	41.75	8.00e-129	452.00
IUUC-Obr-076799	Oryza brachyantha	42.77	2.00e-141	494.00
IUUC-Ogl-077134	Oryza glaberrima	42.54	2.00e-137	481.00
IUUC-Ogu-078655	Oryza glumaepatula	42.49	1.00e-134	471.00
IUUC-Oin-079654	Oryza indica	42.54	3.00e-137	480.00
IUUC-Olo-080706	Oryza longistaminata	41.61	2.00e-134	471.00
IUUC-Ome-081716	Oryza meridionalis	42.78	4.00e-80	290.00
IUUC-Oni-082508	Oryza nivara	43.05	7.00e-81	293.00
IUUC-Opu-083707	Oryza punctata	41.77	9.00e-134	469.00
IUUC-Oru-084453	Oryza rufipogon	41.61	2.00e-134	471.00
IUUC-Osa-085811	Oryza sativa	42.54	2.00e-137	481.00
IUUC-Ola-087361	Oryzias latipes	57.08	0.00e+00	755.00
IUUC-Oga-088015	Otolemur garnettii	55.07	0.00e+00	703.00
IUUC-Oar-090058	Ovis aries	64.07	1.00e-65	242.00
IUUC-Ptr-090631	Pan troglodytes	55.16	7.00e-94	335.00
IUUC-Pan-092306	Papio anubis	56.32	0.00e+00	711.00
IUUC-Pma-094622	Petromyzon marinus	57.74	0.00e+00	752.00
IUUC-Pno-094794	Phaeosphaeria nodorum	37.73	5.00e-122	430.00
IUUC-Ppa-095528	Physcomitrella patens	43.77	2.00e-89	321.00
IUUC-Pfo-096682	Poecilia formosa	56.72	0.00e+00	754.00
IUUC-Pab-097939	Pongo abelii	55.09	1.00e-179	621.00
IUUC-Pop-099530	Populus trichocarpa	44.04	3.00e-124	437.00
IUUC-Pca-100333	Procavia capensis	54.33	0.00e+00	694.00
IUUC-Ppe-102078	Prunus persica	41.17	8.00e-133	466.00
IUUC-Pgr-103525	Puccinia graminis	44.16	1.00e-142	499.00
IUUC-Ptt-103929	Puccinia triticina	42.77	4.00e-137	480.00
IUUC-Pte-104029	Pyrenophora teres	41.27	1.00e-142	498.00
IUUC-Pyt-104446	Pyrenophora triticirepentis	41.11	5.00e-142	496.00
IUUC-Rno-105248	Rattus norvegicus	56.25	0.00e+00	710.00
IUUC-Sce-106381	Saccharomyces cerevisiae	45.08	3.00e-86	311.00
IUUC-Sha-106519	Sarcophilus harrisii	55.48	0.00e+00	717.00
IUUC-Sja-107908	Schizosaccharomyces japonicus	40.82	2.00e-134	471.00
IUUC-Spo-108071	Schizosaccharomyces pombe	39.75	3.00e-123	434.00
IUUC-Smo-109604	Selaginella moellendorffii	44.96	4.00e-143	500.00
IUUC-Sit-110551	Setaria italica	42.93	3.00e-141	493.00
IUUC-Sly-110970	Solanum lycopersicum	47.38	1.00e-83	301.00
IUUC-Stu-112593	Solanum tuberosum	44.01	2.00e-142	497.00
IUUC-Sar-113123	Sorex araneus	47.04	4.00e-76	276.00
IUUC-Sbi-113945	Sorghum bicolor	42.38	1.00e-138	485.00
IUUC-Sre-115188	Sporisorium reilianum	44.47	1.00e-88	319.00
IUUC-Ssc-115352	Sus scrofa	55.98	0.00e+00	722.00
IUUC-Tru-117685	Takifugu rubripes	58.58	0.00e+00	760.00
IUUC-Tni-119982	Tetraodon nigroviridis	56.23	0.00e+00	711.00
IUUC-Tca-121664	Theobroma cacao	43.65	5.00e-143	499.00
IUUC-Tre-122229	Trichoderma reesei	41.30	5.00e-129	453.00
IUUC-Tvi-122576	Trichoderma virens	42.46	2.00e-133	468.00
IUUC-Tae-124110	Triticum aestivum	41.81	4.00e-129	453.00
IUUC-Tur-126781	Triticum urartu	41.65	2.00e-116	411.00
IUUC-Tme-127080	Tuber melanosporum	44.06	6.00e-160	555.00
IUUC-Ttr-128514	Tursiops truncatus	60.53	3.00e-136	477.00
IUUC-Uma-129556	Ustilago maydis	44.83	9.00e-84	303.00
IUUC-Vda-129715	Verticillium dahliae	40.46	5.00e-135	473.00
IUUC-Vvi-131211	Vitis vinifera	40.58	6.00e-131	459.00
IUUC-Xma-133883	Xiphophorus maculatus	56.79	0.00e+00	725.00
IUUC-Yli-134438	Yarrowia lipolytica	45.08	1.00e-77	283.00
IUUC-Zma-135341	Zea mays	42.93	4.00e-83	301.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence