iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Sit-110354

Ensembl Protein ID

Si022093m

UniProt Accession

K3Z6C4; K3Z6C4_SETIT

Genbank Protein ID

KQL17048.1; KQL17049.1

Protein Name

Ribosome biogenesis protein WDR12 homolog

Genbank Nucleotide ID

CM003530; CM003530

Gene Name

LOC101754850; SETIT_022094mg

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Si022094m.g	Si022093m	Si022093m

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	2.30e-33	113.7	359	393

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf..sd.tllvsGsdDgtikvWDlrtg 33
           H+++++++++  s+  +lvs+s Dg++++WDlrt 
   Q: 359  HSSWISACKWhpSSwFHLVSSSFDGKVMLWDLRTA 393
           ***********755677***************996 PP

Organism

Setaria italica

Functional Description
(View)

Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit.

Protein Sequence
(Fasta)

MDTDPSRQVR VRFVTKLPPS LCAPPAAIAV PADLSRMGLS EIVNSLLAAA EPDHKAQPFD 60
FLVDGELVRL PLQQFLLAKG ISAERVLELE YVKAVAPRKQ DEPCPHDDWV SAVDGSNPSF 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TTCCCGCCGC CGCCACGGCG ACCACCACCA CCTCGCCCTC CTCCCGTCCG CCGCCGCCGC 60
AGCCATGGAC ACCGACCCCT CGCGCCAGGT GCGCGTGCGC TTCGTCACCA AGCTGCCTCC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR012972--NLE
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
IPR028599--WDR12/Ytm1

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08154--NLE
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0005730--C:nucleolus
GO:0005654--C:nucleoplasm
GO:0030687--C:preribosome, large subunit precursor
GO:0043021--F:ribonucleoprotein complex binding
GO:0000466--P:maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000463--P:maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

KEGG

sita:101754850

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000532	Aegilops tauschii	87.33	0.00e+00	775.00
IUUC-Atr-002544	Amborella trichopoda	62.50	1.00e-157	548.00
IUUC-Aly-006455	Arabidopsis lyrata	63.19	3.00e-163	566.00
IUUC-Ath-006669	Arabidopsis thaliana	62.50	3.00e-158	550.00
IUUC-Ago-007864	Ashbya gossypii	31.17	6.00e-46	177.00
IUUC-Acl-008177	Aspergillus clavatus	28.54	9.00e-40	157.00
IUUC-Afl-008617	Aspergillus flavus	29.22	2.00e-34	139.00
IUUC-Afu-008752	Aspergillus fumigatus	28.27	1.00e-34	140.00
IUUC-Ani-009136	Aspergillus nidulans	28.61	2.00e-37	149.00
IUUC-Ang-009701	Aspergillus niger	27.74	1.00e-34	140.00
IUUC-Aor-009884	Aspergillus oryzae	29.22	7.00e-35	140.00
IUUC-Bgr-012218	Blumeria graminis	29.17	2.00e-38	153.00
IUUC-Bci-013953	Botrytis cinerea	27.89	3.00e-35	142.00
IUUC-Bdi-014351	Brachypodium distachyon	87.50	0.00e+00	741.00
IUUC-Bol-016514	Brassica oleracea	63.81	2.00e-153	534.00
IUUC-Bra-016988	Brassica rapa	63.81	9.00e-154	535.00
IUUC-Cel-018569	Caenorhabditis elegans	25.38	7.00e-26	110.00
IUUC-Cre-022614	Chlamydomonas reinhardtii	39.55	4.00e-61	228.00
IUUC-Cgl-026562	Colletotrichum gloeosporioides	32.22	6.00e-07	46.60
IUUC-Cne-027063	Cryptococcus neoformans	27.61	7.00e-25	107.00
IUUC-Dor-031082	Dipodomys ordii	35.61	8.00e-24	103.00
IUUC-Dse-031308	Dothistroma septosporum	32.98	2.00e-47	182.00
IUUC-Dme-032189	Drosophila melanogaster	30.40	5.00e-42	164.00
IUUC-Fox-037965	Fusarium oxysporum	25.98	9.00e-30	124.00
IUUC-Fso-038244	Fusarium solani	27.87	2.00e-34	139.00
IUUC-Gma-043756	Glycine max	64.42	3.00e-159	554.00
IUUC-Hvu-047331	Hordeum vulgare	87.19	0.00e+00	706.00
IUUC-Lpe-051675	Leersia perrieri	85.88	0.00e+00	736.00
IUUC-Lma-053258	Leptosphaeria maculans	29.47	8.00e-39	155.00
IUUC-Mtr-058367	Medicago truncatula	60.93	2.00e-149	521.00
IUUC-Mac-065540	Musa acuminata	70.59	2.00e-178	617.00
IUUC-Nfi-068260	Neosartorya fischeri	27.91	9.00e-37	147.00
IUUC-Oba-075712	Oryza barthii	74.07	2.00e-175	607.00
IUUC-Obr-076721	Oryza brachyantha	84.30	0.00e+00	736.00
IUUC-Ogl-077229	Oryza glaberrima	85.91	0.00e+00	744.00
IUUC-Ogu-078977	Oryza glumaepatula	74.54	2.00e-176	610.00
IUUC-Oin-079683	Oryza indica	86.14	0.00e+00	746.00
IUUC-Olo-080291	Oryza longistaminata	64.34	2.00e-129	453.00
IUUC-Ome-081834	Oryza meridionalis	85.78	0.00e+00	738.00
IUUC-Oni-082507	Oryza nivara	83.14	0.00e+00	708.00
IUUC-Opu-083396	Oryza punctata	85.22	0.00e+00	738.00
IUUC-Oru-085220	Oryza rufipogon	83.37	0.00e+00	711.00
IUUC-Osa-085767	Oryza sativa	86.14	0.00e+00	746.00
IUUC-Olu-087740	Ostreococcus lucimarinus	34.73	2.00e-59	222.00
IUUC-Pno-094929	Phaeosphaeria nodorum	28.79	8.00e-38	150.00
IUUC-Ppa-095429	Physcomitrella patens	51.64	8.00e-124	436.00
IUUC-Pop-099977	Populus trichocarpa	64.68	3.00e-163	567.00
IUUC-Pva-102921	Pteropus vampyrus	35.53	2.00e-22	99.40
IUUC-Pgr-103637	Puccinia graminis	26.01	6.00e-33	134.00
IUUC-Ptt-103781	Puccinia triticina	26.56	1.00e-31	130.00
IUUC-Pte-104135	Pyrenophora teres	29.16	3.00e-39	157.00
IUUC-Pyt-104609	Pyrenophora triticirepentis	28.94	6.00e-39	154.00
IUUC-Sce-106401	Saccharomyces cerevisiae	28.99	3.00e-43	168.00
IUUC-Sja-107766	Schizosaccharomyces japonicus	29.22	2.00e-37	149.00
IUUC-Spo-108134	Schizosaccharomyces pombe	27.25	5.00e-34	137.00
IUUC-Ssl-108398	Sclerotinia sclerotiorum	28.10	5.00e-40	157.00
IUUC-Smo-108720	Selaginella moellendorffii	50.83	4.00e-119	420.00
IUUC-Sly-111023	Solanum lycopersicum	57.94	1.00e-146	512.00
IUUC-Stu-112778	Solanum tuberosum	64.42	3.00e-155	540.00
IUUC-Sbi-114193	Sorghum bicolor	90.11	0.00e+00	772.00
IUUC-Tca-121605	Theobroma cacao	66.05	5.00e-167	579.00
IUUC-Tae-123504	Triticum aestivum	87.56	0.00e+00	778.00
IUUC-Tur-126586	Triticum urartu	87.69	0.00e+00	737.00
IUUC-Tme-126900	Tuber melanosporum	32.21	5.00e-48	184.00
IUUC-Uma-129628	Ustilago maydis	24.74	3.00e-09	55.80
IUUC-Vvi-131009	Vitis vinifera	66.67	3.00e-172	597.00
IUUC-Yli-134531	Yarrowia lipolytica	25.76	1.00e-29	124.00
IUUC-Zma-135509	Zea mays	90.34	0.00e+00	786.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence