iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Pop-100028

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

RING-type E3 ubiquitin transferase

Genbank Nucleotide ID

CM000340

Gene Name

POPTRDRAFT_555437; POPTR_0004s02840g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0004s02840	POPTR_0004s02840.1	POPTR_0004s02840.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/U-box	7.40e-31	107.1	4	77

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 1    evpeeflCpIslelMrdPvvlpsGitydrssIekwlasggktcPvtrqpl.teedlvPnltlrrliqawceens 73
           ++p++f+CpIsle+M+dPv+l+sG+t+drssI++wl+sg+++cP+t+ pl ++  l+Pn++lr+li+++  ++s
   Q: 4    HIPDDFKCPISLEIMSDPVILSSGHTFDRSSIQRWLDSGHRSCPITKLPLpEHPRLIPNHALRSLISSFTIQKS 77
           59************************************************777789************987765 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MATHIPDDFK CPISLEIMSD PVILSSGHTF DRSSIQRWLD SGHRSCPITK LPLPEHPRLI 60
PNHALRSLIS SFTIQKSQPD PNPLHSLSQL TRLTKLDPCL RRQITESGAV STILNCVDST 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GTGGGAGAAA CTAACTCAAA AACCCAACCA AACACAAACA AAACAAAACC CAGTTTTTTT 60
AGAGACACGA AAACATGGCT ACACACATCC CTGATGATTT CAAGTGTCCA ATTTCACTAG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0808--Transferase

Interpro

IPR011989--ARM-like
IPR016024--ARM-type_fold
IPR000225--Armadillo
IPR003613--Ubox_domain
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50176--ARM_REPEAT
PS51698--U_BOX

Pfam

PF04564--U-box

SMART

SM00185--ARM
SM00504--Ubox

Gene Ontology

GO:0005737--C:cytoplasm
GO:0005634--C:nucleus
GO:0004842--F:ubiquitin-protein transferase activity

KEGG

pop:POPTR_0004s02840g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-002776	Amborella trichopoda	50.28	3.00e-73	268.00
IUUC-Bol-015331	Brassica oleracea	58.01	7.00e-99	353.00
IUUC-Cho-025050	Choloepus hoffmanni	32.50	3.00e-05	42.40
IUUC-Ogl-077816	Oryza glaberrima	50.40	3.00e-22	98.60
IUUC-Oni-083095	Oryza nivara	50.40	4.00e-22	98.60
IUUC-Opu-084129	Oryza punctata	50.41	1.00e-22	100.00
IUUC-Sit-110168	Setaria italica	43.06	5.00e-45	174.00
IUUC-Tae-124445	Triticum aestivum	43.84	4.00e-54	204.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence