iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
TCM_025381	EOY10011	EOY10011
TCM_025381	EOY10012	EOY10012
TCM_025381	EOY10014	EOY10014
TCM_025381	EOY10015	EOY10015
TCM_025381	EOY10013	EOY10013

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	9.70e-18	64.5	454	489
UBD/Beta-Prp	1.50e-42	146.8	839	1048

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf..sd.tl.lvsGsdDgtikvWDlrtg 33
           H ++v+++af  ++  l +v+++dD+ ikvWD+  g
   Q: 454  HVGGVNDIAFaqPNkQLcIVTCGDDKMIKVWDTVAG 489
           99*********97653359*************8776 PP

UBD/Beta-Prp

   S: 93   hedsvlslsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdg.nllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsfds 190
            e+s++++++s++++++ s+s    + ++++ t +++  t+     + +++++hp++ n+++ G+ D+t+++++++ +++ ++l+g h+++++ l+f++
   Q: 839  AEESATCIALSKNDSYVMSAS-GGKVSLFNMMTFKVMT-TFMSPPPAATYLAFHPQDnNIIAIGMEDSTIQIYNVRVDEVKTKLKG-HQNRITGLAFSQ 934
           57899****************.5789***********9.99999999*********99***************************9.************ PP
   S: 191  ngkelvsgsldgtvklwdlq.....tgecvrtlnght...dnvksvrfspnderlvsgssDgsiriWdlrsgdllktlqlhn..ssvisvavlsfgdnv 279
           + ++lvs + d ++ +w++      +++ +++  g +   +  + v+f++++++l+++ ++ +i i+d  + ++l + + +   s  is+a +s +++ 
   Q: 935  TLNSLVSSGADAQLCVWSIDgwekkKSRFIQAPSGRQsplSGETKVQFHNDQTHLLVV-HESQIAIYD-SKLECLCSWSPKDslSAPISSAIYSCDGSL 1031
           ********************9965555556666666666656678****999999988.7*******9.566676666665523333444446666776 PP
   S: 280  lvlgsedskvniwklkk 296
           +++g  d+ v +++ ++
   Q: 1032 IYAGFCDGAVGVFDSDN 1048
           66666699999988766 PP

Organism

Theobroma cacao

Protein Sequence
(Fasta)

MSSLSRELVF LILQFLDEEK FKETVHKLEQ ESGFFFNMKH FEDQVQAGEW DEVERYLCGF 60
TKVEDNRYSM KIFFEIRKQK YLEALDRQDR AKAVEILVKD LKVFASFNEE LFKEITQLLT 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATTATTATTA TTTTATTTTT ATTTATTATT TTTTTTTCAA GCCTCCAAAT GTATTTATAA 60
TATTAACATT TTTTATTATT TGTCATTGTT ATTATTTACA TATATATTTT AATTTTTAAT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR006595--CTLH_C
IPR006594--LisH
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS50897--CTLH
PS50896--LISH
PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00668--CTLH
SM00667--LisH
SM00320--WD40

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000215	Aegilops tauschii	77.75	0.00e+00	1793.00
IUUC-Atr-003021	Amborella trichopoda	81.52	0.00e+00	1576.00
IUUC-Bdi-014941	Brachypodium distachyon	77.93	0.00e+00	1783.00
IUUC-Lpe-051683	Leersia perrieri	78.11	0.00e+00	1810.00
IUUC-Mac-064578	Musa acuminata	78.72	0.00e+00	1848.00
IUUC-Oba-075179	Oryza barthii	77.93	0.00e+00	1795.00
IUUC-Obr-076730	Oryza brachyantha	78.02	0.00e+00	1803.00
IUUC-Ogl-076958	Oryza glaberrima	78.37	0.00e+00	1837.00
IUUC-Ogu-078424	Oryza glumaepatula	77.93	0.00e+00	1795.00
IUUC-Oin-079972	Oryza indica	78.11	0.00e+00	1806.00
IUUC-Olo-080979	Oryza longistaminata	78.02	0.00e+00	1804.00
IUUC-Ome-081212	Oryza meridionalis	77.93	0.00e+00	1795.00
IUUC-Oni-082820	Oryza nivara	77.93	0.00e+00	1795.00
IUUC-Opu-083223	Oryza punctata	75.71	0.00e+00	1739.00
IUUC-Oru-084418	Oryza rufipogon	76.76	0.00e+00	1792.00
IUUC-Osa-086275	Oryza sativa	78.11	0.00e+00	1806.00
IUUC-Sit-110121	Setaria italica	78.57	0.00e+00	1800.00
IUUC-Sly-111268	Solanum lycopersicum	78.75	0.00e+00	1827.00
IUUC-Sbi-114032	Sorghum bicolor	77.70	0.00e+00	1738.00
IUUC-Tae-125673	Triticum aestivum	77.75	0.00e+00	1793.00
IUUC-Tur-126718	Triticum urartu	76.59	0.00e+00	1759.00
IUUC-Vvi-131109	Vitis vinifera	85.16	0.00e+00	1955.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence