iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
TRANSFAC
Protein-protein Interaction
PINA	HINT	Mentha
Protein Expression/Proteomics

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/RING	3.60e-08	34.7	186	227

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledf..kdgplvlpCgHvfhadClqkwpglknssskefrCPlCr 46
           C+iCle++  +++ lv  C H+fh+ C+  w        ++ +CP+C+
   Q: 186  CPICLEEYdiENPKLVAKCDHHFHLACILEW------MERSETCPVCN 227
           ******997677555677*************......**********7 PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MVSIDEESSG FVVFVKQKKK KREEEMGGCC CCSSSRRADV DNGPAYYYYP RATEERVPLS 60
SAHNRTSSAI STGVVVVDTN LETSSPDAYI PPPLPTPFDV PIGIPQTPAS GEEATCVDIR 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GTAATTTCTT AGGAAAGTCA TTTTGATAGA GCGCACGATA AACACAGCAC CGCAAAAAGC 60
ACAGAAGCAG AGAAAGACGA AGACAAAACA AAAAAAGCTT CCCCCAAGAA CAAAAAGTAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome

Interpro

IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

Pfam

PF13639--zf-RING_2

SMART

SM00184--RING

Gene Ontology

GO:0005739--C:mitochondrion
GO:0008270--F:zinc ion binding

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000389	Aegilops tauschii	42.22	6.00e-32	129.00
IUUC-Atr-002805	Amborella trichopoda	43.98	4.00e-31	127.00
IUUC-Aly-005682	Arabidopsis lyrata	96.70	1.00e-97	348.00
IUUC-Bdi-014710	Brachypodium distachyon	41.35	1.00e-37	148.00
IUUC-Bol-015746	Brassica oleracea	86.05	2.00e-83	300.00
IUUC-Bra-017455	Brassica rapa	85.12	9.00e-86	308.00
IUUC-Gma-044261	Glycine max	53.80	2.00e-47	181.00
IUUC-Hvu-047682	Hordeum vulgare	43.35	1.00e-36	145.00
IUUC-Mtr-057775	Medicago truncatula	49.30	8.00e-36	142.00
IUUC-Mac-065486	Musa acuminata	44.29	7.00e-45	172.00
IUUC-Oba-075793	Oryza barthii	36.84	1.00e-30	125.00
IUUC-Obr-076796	Oryza brachyantha	40.76	3.00e-37	147.00
IUUC-Ogl-077552	Oryza glaberrima	36.41	4.00e-31	126.00
IUUC-Ogu-078163	Oryza glumaepatula	36.84	1.00e-30	125.00
IUUC-Oin-079978	Oryza indica	36.41	4.00e-31	126.00
IUUC-Olo-081002	Oryza longistaminata	36.42	2.00e-22	97.40
IUUC-Ome-081206	Oryza meridionalis	38.27	3.00e-31	126.00
IUUC-Oni-082498	Oryza nivara	36.84	1.00e-30	125.00
IUUC-Oru-084462	Oryza rufipogon	36.84	1.00e-30	125.00
IUUC-Osa-085799	Oryza sativa	36.41	4.00e-31	126.00
IUUC-Olu-087706	Ostreococcus lucimarinus	34.72	2.00e-14	71.20
IUUC-Pop-099294	Populus trichocarpa	48.53	7.00e-37	146.00
IUUC-Ppe-101765	Prunus persica	51.17	7.00e-43	166.00
IUUC-Sit-110172	Setaria italica	40.84	2.00e-31	127.00
IUUC-Sly-111149	Solanum lycopersicum	40.45	1.00e-37	148.00
IUUC-Stu-111977	Solanum tuberosum	41.98	5.00e-37	146.00
IUUC-Sbi-114500	Sorghum bicolor	40.38	5.00e-37	146.00
IUUC-Tca-121372	Theobroma cacao	48.05	6.00e-41	159.00
IUUC-Tae-124908	Triticum aestivum	42.79	5.00e-38	149.00
IUUC-Vvi-130993	Vitis vinifera	51.85	1.00e-47	181.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence