iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
fgenesh2_kg.7__2884__AT4G14550.1	fgenesh2_kg.7__2884__AT4G14550.1	fgenesh2_kg.7__2884__AT4G14550.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
ULD/UDP/UFD/PB1	6.60e-16	59.0	112	209

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

ULD/UDP/UFD/PB1

   S: 3    rvkvsykgeirsfaldlekpgkfedLlkavrt.lt.......................elknsevalkYeDedGDlv 55
           +vkvs++g+++++++dl+ + +++dL +a+++ +                         l+ se+ + YeD+dGD++
   Q: 112  FVKVSMDGAPYLRKVDLKMYKSYKDLSDALAKmFSsftmgsygaqgmidfmneskvmdLLNSSEYVPSYEDKDGDWM 188
           8*******************************62256699*****************88888*************** PP
   S: 56   tlksDedldkavsllaskksllrlliqk 83
            l++D+++ ++v+      s++r++i+k
   Q: 189  -LVGDVPWPMFVE------SCKRMRIMK 209
           .************......********8 PP

Organism

Arabidopsis lyrata

Functional Description
(View)

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.

Protein Sequence
(Fasta)

MNLKETELCL GLPGGAETVE CPSKSGVGNK RGFSETVGLK LNLQSNKQGP VDLNVNGAPK 60
EKTFLKDPSK PPAKAQVVGW PPVRNYRKNV MANQKSGEAE EAMSSGGGTV AFVKVSMDGA 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GCAAGAGTTA TCGAGAGAGA GAGAAAACAT ATTTTGATTT AACAAAAAAA TAGACAAAGC 60
AAGAAGAGAT GAACCTTAAG GAGACGGAGC TTTGTCTTGG CCTCCCTGGA GGCGCTGAAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0927--Auxin signaling pathway
KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0678--Repressor
KW-0804--Transcription
KW-0805--Transcription regulation

Interpro

IPR033389--AUX/IAA_dom
IPR003311--AUX_IAA
IPR000270--PB1_dom

PROSITE

PS51745--PB1

Pfam

PF02309--AUX_IAA

Gene Ontology

GO:0005634--C:nucleus
GO:0009734--P:auxin-activated signaling pathway
GO:0010102--P:lateral root morphogenesis
GO:0045892--P:negative regulation of transcription, DNA-templated
GO:0006351--P:transcription, DNA-templated

KEGG

aly:ARALYDRAFT_493451

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ath-006635	Arabidopsis thaliana	96.30	8.00e-113	398.00
IUUC-Bol-015682	Brassica oleracea	85.09	2.00e-111	394.00
IUUC-Bra-017218	Brassica rapa	84.65	2.00e-111	394.00
IUUC-Gma-043505	Glycine max	75.86	4.00e-98	349.00
IUUC-Lpe-050724	Leersia perrieri	47.58	1.00e-42	165.00
IUUC-Mtr-058575	Medicago truncatula	74.11	4.00e-85	306.00
IUUC-Mac-065450	Musa acuminata	62.79	5.00e-68	249.00
IUUC-Oba-075945	Oryza barthii	71.10	1.00e-62	232.00
IUUC-Oin-079136	Oryza indica	71.10	1.00e-62	232.00
IUUC-Olo-080519	Oryza longistaminata	53.69	3.00e-40	157.00
IUUC-Oni-082674	Oryza nivara	71.10	1.00e-62	232.00
IUUC-Opu-083338	Oryza punctata	61.73	3.00e-46	177.00
IUUC-Oru-084731	Oryza rufipogon	61.11	2.00e-45	175.00
IUUC-Osa-086164	Oryza sativa	71.10	1.00e-62	232.00
IUUC-Pop-099950	Populus trichocarpa	73.64	9.00e-95	338.00
IUUC-Ppe-101719	Prunus persica	74.57	5.00e-85	306.00
IUUC-Stu-112437	Solanum tuberosum	67.36	4.00e-82	296.00
IUUC-Tca-121826	Theobroma cacao	73.14	3.00e-94	337.00
IUUC-Tae-124253	Triticum aestivum	72.29	9.00e-63	232.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence