iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Tca-121720

Ensembl Protein ID

EOY31397

UniProt Accession

A0A061GQG1; A0A061GQG1_THECC

Genbank Protein ID

EOY31397.1

Protein Name

LisH dimerization motif,WD40/YVTN repeat-like-containing domain isoform 2

Genbank Nucleotide ID

CM001887

Gene Name

TCM_038331

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
TCM_038331	EOY31399	EOY31399
TCM_038331	EOY31397	EOY31397
TCM_038331	EOY31396	EOY31396

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.00e-23	83.3	680	709
UBD/Beta-Prp	2.20e-46	159.3	622	766

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf.sd.tllvsGsdDgtikvWD 29
           H++ +t+++f ++  +l+++s D+t++vWD
   Q: 680  HSSLITDVRFsPSmSRLATSSFDKTVRVWD 709
           9**********66799************** PP

UBD/Beta-Prp

   S: 54   e...................vtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfspsgdklvsGshdrtirvwdlet.gqcleetls 134
                               v+++ fs+dgk+l++g+ D+ + +w  +t k+ +tl++h++ +++++fsps ++l++ s d+t+rvwd ++ g+ l+ t+ 
   Q: 622  DvskgftfmevnsvrastskVNCCHFSSDGKLLASGGHDKKAVLWYTETLKPKSTLEEHSSLITDVRFSPSMSRLATSSFDKTVRVWDADSpGYSLR-TFM 721
           04444444444444444444********************************************************************987477777.*** PP
   S: 135  ghdgvvncvvvhpdg.nllvsGslDrtvrlWdlktgkllrtltgg 178
           gh+++v+++ +hp++ +l+ s+  D+ +r W++++g++ r ++gg
   Q: 722  GHSATVMSLDFHPSKdDLICSCDGDGEIRYWSINNGSCARVFKGG 766
           **************99**************************983 PP

Organism

Theobroma cacao

Protein Sequence
(Fasta)

MSQTNWEADK MLDVYIHDYL VKRDLKASAQ AFQAEGKVSS DPVAIDAPGG FLFEWWSVFW 60
DIFIARTNEK HSEVAASYIE TQLIKAREQQ QQQQQQQQQP QQPQHQQQQQ QQQQLQMHQL 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGTCTCAAA CCAACTGGGA AGCTGATAAA ATGTAACTTC TTTCTTTTTC CCTTCTGCTT 60
ATTAAAGCTT GCTTTTTTGG GTTTTAGATT TTTTTCTTTA GTTTCTAATG TGGCTTTGGA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR006594--LisH
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS50896--LISH
PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08513--LisH
PF00400--WD40

SMART

SM00667--LisH
SM00320--WD40

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000855	Aegilops tauschii	62.10	0.00e+00	763.00
IUUC-Atr-002973	Amborella trichopoda	73.85	0.00e+00	865.00
IUUC-Aly-006446	Arabidopsis lyrata	75.49	0.00e+00	1038.00
IUUC-Ath-006594	Arabidopsis thaliana	71.64	0.00e+00	1017.00
IUUC-Bdi-015034	Brachypodium distachyon	63.22	0.00e+00	794.00
IUUC-Bol-015720	Brassica oleracea	73.35	0.00e+00	965.00
IUUC-Bra-017481	Brassica rapa	74.14	0.00e+00	1010.00
IUUC-Gma-043069	Glycine max	81.88	0.00e+00	1064.00
IUUC-Hvu-047773	Hordeum vulgare	68.62	9.00e-153	532.00
IUUC-Lpe-051125	Leersia perrieri	58.69	0.00e+00	719.00
IUUC-Mtr-058613	Medicago truncatula	81.23	0.00e+00	1049.00
IUUC-Mac-064770	Musa acuminata	67.44	0.00e+00	888.00
IUUC-Obr-076415	Oryza brachyantha	62.48	0.00e+00	796.00
IUUC-Olo-080338	Oryza longistaminata	60.85	0.00e+00	692.00
IUUC-Ome-081375	Oryza meridionalis	57.37	0.00e+00	678.00
IUUC-Opu-083283	Oryza punctata	56.44	0.00e+00	667.00
IUUC-Ppa-095985	Physcomitrella patens	67.37	3.00e-162	563.00
IUUC-Pop-098994	Populus trichocarpa	81.88	0.00e+00	1121.00
IUUC-Ppe-102018	Prunus persica	81.70	0.00e+00	1093.00
IUUC-Smo-109630	Selaginella moellendorffii	52.72	0.00e+00	677.00
IUUC-Sit-110603	Setaria italica	54.94	0.00e+00	655.00
IUUC-Sly-110921	Solanum lycopersicum	77.24	0.00e+00	996.00
IUUC-Sbi-113848	Sorghum bicolor	62.27	0.00e+00	790.00
IUUC-Tae-125242	Triticum aestivum	55.99	0.00e+00	678.00
IUUC-Tur-126626	Triticum urartu	66.90	1.00e-147	516.00
IUUC-Vvi-131473	Vitis vinifera	82.59	0.00e+00	1090.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence