iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Pop-100088

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

RING-type E3 ubiquitin transferase

Genbank Nucleotide ID

CM000346

Gene Name

POPTRDRAFT_726064; POPTR_0010s06810g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0010s06810	POPTR_0010s06810.1	POPTR_0010s06810.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/U-box	2.90e-29	102.1	279	351

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 2    vpeeflCpIslelMrdPvvlpsGitydrssIekwlasggktcPvtrqplteedlvPnltlrrliqawceenss 74
           +pee++CpIsl lM dPv+++sG+ty+r +Iekw+++g+ tcP+t+q+l++  l+Pn+ ++ l+ +wce+n++
   Q: 279  PPEELRCPISLHLMYDPVIIASGQTYERICIEKWFSDGHDTCPKTQQKLSHLCLTPNYCVKGLVASWCEQNGV 351
           59********************************************************************986 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MDITEVEENL FAASDAKLHG EMCKELSVIY CKILSIFPSL EAARPRSKSG IQALCSMHIA 60
LEKAKNVLRH CSECSKLYLA ITGDSVLLKF EKARSALVDS LRRVEDIVPQ SIGCEILEIV 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AACCGATTTG AGCTCCAGCT CTAACGAGAT GGGACTGTAC AGATCATCAT AGAAACCTCA 60
CCCACAATCC TCTCTTTCGT TACTTTTTTT TTCTTTTTTG TAAATGCTAT TCTATAGAGC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0808--Transferase

Interpro

IPR011989--ARM-like
IPR016024--ARM-type_fold
IPR003613--Ubox_domain
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS51698--U_BOX

Pfam

PF04564--U-box

SMART

SM00504--Ubox

Gene Ontology

GO:0004842--F:ubiquitin-protein transferase activity

KEGG

pop:POPTR_0010s06810g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000843	Aegilops tauschii	54.25	0.00e+00	810.00
IUUC-Atr-002816	Amborella trichopoda	56.12	0.00e+00	809.00
IUUC-Aly-006182	Arabidopsis lyrata	68.26	0.00e+00	1053.00
IUUC-Ath-007134	Arabidopsis thaliana	68.47	0.00e+00	1080.00
IUUC-Bdi-014509	Brachypodium distachyon	53.90	0.00e+00	789.00
IUUC-Bol-015502	Brassica oleracea	67.67	0.00e+00	1033.00
IUUC-Bra-017502	Brassica rapa	67.64	0.00e+00	1043.00
IUUC-Gma-043476	Glycine max	72.94	0.00e+00	1115.00
IUUC-Hvu-047761	Hordeum vulgare	54.03	0.00e+00	781.00
IUUC-Lpe-051154	Leersia perrieri	56.35	0.00e+00	827.00
IUUC-Mtr-058026	Medicago truncatula	70.48	0.00e+00	1014.00
IUUC-Oba-075037	Oryza barthii	55.98	0.00e+00	850.00
IUUC-Obr-076068	Oryza brachyantha	55.42	0.00e+00	814.00
IUUC-Ogl-077029	Oryza glaberrima	55.98	0.00e+00	850.00
IUUC-Ogu-078230	Oryza glumaepatula	55.75	0.00e+00	845.00
IUUC-Oin-079566	Oryza indica	56.39	0.00e+00	851.00
IUUC-Olo-080879	Oryza longistaminata	57.26	0.00e+00	805.00
IUUC-Ome-081577	Oryza meridionalis	56.27	0.00e+00	848.00
IUUC-Oni-082610	Oryza nivara	55.50	0.00e+00	841.00
IUUC-Opu-083186	Oryza punctata	56.16	0.00e+00	853.00
IUUC-Oru-084375	Oryza rufipogon	55.79	0.00e+00	845.00
IUUC-Osa-085376	Oryza sativa	55.72	0.00e+00	843.00
IUUC-Ppa-095879	Physcomitrella patens	36.89	1.00e-124	440.00
IUUC-Ppe-101913	Prunus persica	76.26	0.00e+00	1203.00
IUUC-Sit-109865	Setaria italica	55.17	0.00e+00	838.00
IUUC-Sly-110840	Solanum lycopersicum	69.63	0.00e+00	1048.00
IUUC-Stu-112347	Solanum tuberosum	69.07	0.00e+00	1030.00
IUUC-Sbi-114310	Sorghum bicolor	54.72	0.00e+00	823.00
IUUC-Tca-121734	Theobroma cacao	78.10	0.00e+00	1215.00
IUUC-Tae-122875	Triticum aestivum	54.86	0.00e+00	812.00
IUUC-Tur-126692	Triticum urartu	51.80	0.00e+00	694.00
IUUC-Vvi-131273	Vitis vinifera	76.23	0.00e+00	1217.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence