iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Kpa-049185

Ensembl Protein ID

CAY69243

UniProt Accession

C4R169; C4R169_KOMPG

Genbank Protein ID

CAY69243.1

Protein Name

Nucleolar protein, specifically associated with the U3 snoRNA

Genbank Nucleotide ID

FN392320

Gene Name

PAS_chr2-1_0606

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
PAS_chr2-1_0606	CAY69243	CAY69243

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	4.90e-45	147.7	114	145
UBD/Beta-Prp	1.20e-93	311.7	530	687

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf..sdtllvsGsdDgtikvWDl 30
           gH + vt l f  s+t+lvsGs+D t+ vWDl
   Q: 114  GHRSAVTILVFdrSGTRLVSGSRDSTMIVWDL 145
           899******9*9666****************7 PP

UBD/Beta-Prp

   S: 9    hksvitcvkfspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfspsgdkl 109
           + + i +vk+spd++lla++ +d++++v+ ++t k++  l+gh+ +v ++++s+d ki++t+s D++ik+w l+ g+c  ++ gh+ds++s++f  +++++
   Q: 530  MNDEILAVKVSPDQQLLAVSTTDNCVRVFYLDTLKFFLNLYGHKLPVLSIDISQDNKIIITSSADKNIKIWGLDFGDCHKSIFGHQDSIMSVRFISNTHHF 630
           6677888********************************************************************************************** PP
   S: 110  vsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlk 167
           +++s+d +++ wd ++ +c++  l+ h++ v+c +v+ dg+ +v++s D  +r+W   
   Q: 631  ITTSKDGMVKYWDGDKFECIQ-KLAAHQSEVWCSAVSLDGSFFVTASHDHSIRIWEET 687
           *********************.*********************************763 PP

Organism

Komagataella pastoris

Protein Sequence
(Fasta)

MVKSYQRYEL GKSFGVISSD SNIVYLPQKK STGKVITGGL EDILVWDIKT GELSQKLHDG 60
IPIGAADASV SGAPSQVVRL EYHHNNNIVA AGYSDGSIKI WDLTSGTVVM SLQGHRSAVT 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGTCAAGT CATATCAAAG ATATGAACTC GGCAAATCAT TTGGAGTGAT CAGTTCAGAT 60
AGCAATATTG TGTATCTTCC TCAAAAGAAA TCCACGGGAA AAGTCATCAC CGGTGGATTG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR024977--Apc4_WD40_dom
IPR020472--G-protein_beta_WD-40_rep
IPR011047--Quinoprotein_ADH-like_supfam
IPR007148--SSU_processome_Utp12
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF12894--ANAPC4_WD40
PF04003--Utp12
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0005829--C:cytosol
GO:0034388--C:Pwp2p-containing subcomplex of 90S preribosome
GO:0032040--C:small-subunit processome
GO:0030515--F:snoRNA binding
GO:0000480--P:endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000447--P:endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000472--P:endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

KEGG

ppa:PAS_chr2-1_0606

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000784	Aegilops tauschii	35.46	2.00e-128	451.00
IUUC-Aml-001245	Ailuropoda melanoleuca	35.48	6.00e-146	509.00
IUUC-Atr-002700	Amborella trichopoda	33.86	5.00e-142	496.00
IUUC-Apl-004164	Anas platyrhynchos	35.41	2.00e-116	410.00
IUUC-Aca-004765	Anolis carolinensis	32.61	2.00e-142	497.00
IUUC-Aly-006503	Arabidopsis lyrata	32.99	4.00e-147	513.00
IUUC-Ath-006848	Arabidopsis thaliana	32.96	1.00e-150	525.00
IUUC-Ago-007909	Ashbya gossypii	51.46	0.00e+00	946.00
IUUC-Acl-008238	Aspergillus clavatus	39.10	0.00e+00	697.00
IUUC-Afl-008544	Aspergillus flavus	39.26	0.00e+00	676.00
IUUC-Afu-008868	Aspergillus fumigatus	39.06	0.00e+00	697.00
IUUC-Ani-009367	Aspergillus nidulans	39.42	0.00e+00	676.00
IUUC-Ang-009732	Aspergillus niger	40.49	0.00e+00	709.00
IUUC-Aor-010140	Aspergillus oryzae	39.49	0.00e+00	681.00
IUUC-Ate-010572	Aspergillus terreus	38.29	0.00e+00	673.00
IUUC-Ame-010956	Astyanax mexicanus	35.24	1.00e-139	488.00
IUUC-Bgr-012296	Blumeria graminis	39.25	0.00e+00	682.00
IUUC-Bta-012716	Bos taurus	35.02	4.00e-153	533.00
IUUC-Bci-013699	Botrytis cinerea	40.56	0.00e+00	679.00
IUUC-Bdi-014525	Brachypodium distachyon	32.71	1.00e-130	458.00
IUUC-Bol-015117	Brassica oleracea	34.87	8.00e-146	509.00
IUUC-Bra-016869	Brassica rapa	35.06	5.00e-146	509.00
IUUC-Cel-018570	Caenorhabditis elegans	26.90	5.00e-77	280.00
IUUC-Cja-019425	Callithrix jacchus	34.80	1.00e-144	505.00
IUUC-Cfa-020787	Canis familiaris	34.82	7.00e-147	512.00
IUUC-Cpo-021729	Cavia porcellus	38.07	3.00e-115	407.00
IUUC-Cre-022678	Chlamydomonas reinhardtii	39.06	1.00e-88	319.00
IUUC-Csa-024098	Chlorocebus sabaeus	35.85	5.00e-148	516.00
IUUC-Cho-024495	Choloepus hoffmanni	36.33	1.00e-84	305.00
IUUC-Cin-025245	Ciona intestinalis	32.27	1.00e-87	315.00
IUUC-Cgl-026708	Colletotrichum gloeosporioides	41.31	0.00e+00	705.00
IUUC-Cne-026835	Cryptococcus neoformans	35.57	6.00e-150	522.00
IUUC-Cme-027162	Cyanidioschyzon merolae	23.55	1.00e-50	193.00
IUUC-Dre-027874	Danio rerio	33.58	2.00e-147	514.00
IUUC-Dno-028905	Dasypus novemcinctus	35.36	1.00e-147	514.00
IUUC-Dor-030383	Dipodomys ordii	37.50	6.00e-55	207.00
IUUC-Dse-031297	Dothistroma septosporum	37.56	0.00e+00	629.00
IUUC-Dme-031956	Drosophila melanogaster	30.69	5.00e-115	406.00
IUUC-Ete-032608	Echinops telfairi	31.49	5.00e-77	280.00
IUUC-Eca-034181	Equus caballus	35.17	6.00e-146	509.00
IUUC-Eeu-034495	Erinaceus europaeus	35.72	3.00e-141	494.00
IUUC-Fca-035994	Felis catus	36.58	2.00e-144	504.00
IUUC-Fal-036611	Ficedula albicollis	33.78	7.00e-141	492.00
IUUC-Fox-037807	Fusarium oxysporum	41.78	0.00e+00	723.00
IUUC-Fso-038090	Fusarium solani	40.77	0.00e+00	704.00
IUUC-Gmo-039018	Gadus morhua	32.83	3.00e-74	270.00
IUUC-Ggr-039748	Gaeumannomyces graminis	39.76	0.00e+00	724.00
IUUC-Gga-040707	Gallus gallus	37.63	1.00e-107	382.00
IUUC-Gac-042334	Gasterosteus aculeatus	33.06	2.00e-32	132.00
IUUC-Gma-043860	Glycine max	33.44	2.00e-137	481.00
IUUC-Ggo-045334	Gorilla gorilla	35.57	5.00e-146	509.00
IUUC-Hsa-046996	Homo sapiens	35.47	6.00e-144	502.00
IUUC-Hvu-047381	Hordeum vulgare	30.52	9.00e-71	258.00
IUUC-Itr-047938	Ictidomys tridecemlineatus	39.26	1.00e-109	389.00
IUUC-Lch-050098	Latimeria chalumnae	32.40	1.00e-120	425.00
IUUC-Lpe-050710	Leersia perrieri	34.13	2.00e-141	494.00
IUUC-Loc-052745	Lepisosteus oculatus	33.30	8.00e-135	472.00
IUUC-Lma-053104	Leptosphaeria maculans	39.84	0.00e+00	707.00
IUUC-Laf-054395	Loxodonta africana	34.96	3.00e-145	507.00
IUUC-Mcc-055077	Macaca mulatta	35.08	8.00e-146	509.00
IUUC-Meu-056418	Macropus eugenii	38.74	1.00e-90	325.00
IUUC-Mor-057031	Magnaporthe oryzae	40.46	0.00e+00	650.00
IUUC-Mpo-057420	Magnaporthe poae	40.18	0.00e+00	704.00
IUUC-Mtr-057838	Medicago truncatula	32.83	3.00e-143	500.00
IUUC-Mla-058854	Melampsora laricipopulina	35.42	1.00e-152	531.00
IUUC-Mga-060120	Meleagris gallopavo	37.56	8.00e-106	375.00
IUUC-Mvi-060407	Microbotryum violaceum	41.83	3.00e-141	494.00
IUUC-Mmr-060635	Microcebus murinus	35.73	2.00e-147	514.00
IUUC-Mdo-063023	Monodelphis domestica	34.01	1.00e-150	525.00
IUUC-Mmu-064103	Mus musculus	35.04	4.00e-151	526.00
IUUC-Mac-065569	Musa acuminata	33.74	1.00e-145	508.00
IUUC-Mpu-066462	Mustela putorius furo	35.72	2.00e-147	514.00
IUUC-Mlu-067894	Myotis lucifugus	35.79	1.00e-147	515.00
IUUC-Nfi-068321	Neosartorya fischeri	39.06	0.00e+00	681.00
IUUC-Ncr-068661	Neurospora crassa	41.19	0.00e+00	707.00
IUUC-Nle-069409	Nomascus leucogenys	35.67	2.00e-145	508.00
IUUC-Opr-070445	Ochotona princeps	38.61	4.00e-104	370.00
IUUC-Ont-072339	Oreochromis niloticus	33.89	9.00e-138	482.00
IUUC-Oan-073688	Ornithorhynchus anatinus	34.20	6.00e-145	506.00
IUUC-Ocu-074227	Oryctolagus cuniculus	34.62	2.00e-145	507.00
IUUC-Oba-075635	Oryza barthii	34.50	8.00e-135	472.00
IUUC-Obr-076897	Oryza brachyantha	35.63	1.00e-143	501.00
IUUC-Ogl-077555	Oryza glaberrima	34.39	2.00e-134	471.00
IUUC-Ogu-078724	Oryza glumaepatula	34.54	8.00e-137	479.00
IUUC-Oin-080030	Oryza indica	34.54	1.00e-134	471.00
IUUC-Olo-080687	Oryza longistaminata	32.47	5.00e-122	429.00
IUUC-Ome-081867	Oryza meridionalis	34.65	4.00e-136	476.00
IUUC-Oni-082559	Oryza nivara	34.40	3.00e-134	470.00
IUUC-Opu-083332	Oryza punctata	34.72	1.00e-128	452.00
IUUC-Oru-084455	Oryza rufipogon	34.51	3.00e-135	473.00
IUUC-Osa-085793	Oryza sativa	34.51	3.00e-135	473.00
IUUC-Ola-087395	Oryzias latipes	37.01	8.00e-99	352.00
IUUC-Olu-087768	Ostreococcus lucimarinus	33.99	6.00e-132	462.00
IUUC-Oga-088574	Otolemur garnettii	34.53	4.00e-145	506.00
IUUC-Oar-089453	Ovis aries	34.74	9.00e-153	532.00
IUUC-Ptr-090694	Pan troglodytes	39.80	2.00e-109	387.00
IUUC-Pan-092420	Papio anubis	34.98	7.00e-147	512.00
IUUC-Psi-093683	Pelodiscus sinensis	34.62	2.00e-147	514.00
IUUC-Pma-094197	Petromyzon marinus	31.05	1.00e-29	120.00
IUUC-Pno-094783	Phaeosphaeria nodorum	39.98	0.00e+00	686.00
IUUC-Ppa-095208	Physcomitrella patens	34.35	3.00e-136	477.00
IUUC-Pfo-096299	Poecilia formosa	33.44	1.00e-141	494.00
IUUC-Pab-098706	Pongo abelii	35.88	4.00e-145	506.00
IUUC-Pop-099275	Populus trichocarpa	33.96	1.00e-136	478.00
IUUC-Pca-100796	Procavia capensis	28.89	1.00e-81	295.00
IUUC-Ppe-101861	Prunus persica	34.70	4.00e-144	503.00
IUUC-Pva-103241	Pteropus vampyrus	36.79	1.00e-133	468.00
IUUC-Pgr-103432	Puccinia graminis	35.27	7.00e-152	529.00
IUUC-Ptt-103742	Puccinia triticina	33.79	1.00e-138	484.00
IUUC-Pte-104069	Pyrenophora teres	40.04	0.00e+00	672.00
IUUC-Pyt-104650	Pyrenophora triticirepentis	40.04	0.00e+00	702.00
IUUC-Rno-105219	Rattus norvegicus	33.61	3.00e-143	500.00
IUUC-Sce-106271	Saccharomyces cerevisiae	51.30	0.00e+00	956.00
IUUC-Sha-107550	Sarcophilus harrisii	34.97	8.00e-153	532.00
IUUC-Sja-107664	Schizosaccharomyces japonicus	41.23	0.00e+00	686.00
IUUC-Spo-108239	Schizosaccharomyces pombe	41.00	0.00e+00	689.00
IUUC-Ssl-108626	Sclerotinia sclerotiorum	41.04	0.00e+00	712.00
IUUC-Smo-108974	Selaginella moellendorffii	34.07	1.00e-146	511.00
IUUC-Sit-110000	Setaria italica	32.57	2.00e-128	451.00
IUUC-Sly-111595	Solanum lycopersicum	34.67	6.00e-147	512.00
IUUC-Stu-112516	Solanum tuberosum	34.05	3.00e-143	500.00
IUUC-Sar-113195	Sorex araneus	39.61	2.00e-104	371.00
IUUC-Sbi-114465	Sorghum bicolor	34.86	2.00e-135	474.00
IUUC-Sre-115006	Sporisorium reilianum	32.53	6.00e-152	529.00
IUUC-Ssc-115929	Sus scrofa	35.31	4.00e-146	509.00
IUUC-Tgu-117282	Taeniopygia guttata	33.92	4.00e-137	480.00
IUUC-Tru-118406	Takifugu rubripes	34.49	2.00e-139	487.00
IUUC-Tsy-119170	Tarsius syrichta	33.68	1.00e-139	488.00
IUUC-Tni-119721	Tetraodon nigroviridis	38.37	8.00e-107	379.00
IUUC-Tca-121761	Theobroma cacao	34.73	1.00e-149	521.00
IUUC-Tre-121908	Trichoderma reesei	41.50	0.00e+00	697.00
IUUC-Tvi-122547	Trichoderma virens	41.91	0.00e+00	707.00
IUUC-Tae-125433	Triticum aestivum	35.55	3.00e-134	470.00
IUUC-Tur-126811	Triticum urartu	35.97	6.00e-136	476.00
IUUC-Tme-126987	Tuber melanosporum	41.96	0.00e+00	736.00
IUUC-Tbe-127315	Tupaia belangeri	42.13	5.00e-97	347.00
IUUC-Ttr-129165	Tursiops truncatus	41.38	8.00e-61	226.00
IUUC-Uma-129651	Ustilago maydis	31.86	3.00e-149	520.00
IUUC-Vda-129973	Verticillium dahliae	40.81	0.00e+00	691.00
IUUC-Vpa-130163	Vicugna pacos	36.47	1.00e-47	182.00
IUUC-Vvi-131402	Vitis vinifera	32.30	5.00e-141	493.00
IUUC-Xtr-132296	Xenopus tropicalis	33.13	1.00e-142	498.00
IUUC-Xma-133028	Xiphophorus maculatus	33.75	1.00e-140	491.00
IUUC-Yli-134484	Yarrowia lipolytica	44.13	0.00e+00	740.00
IUUC-Zma-135938	Zea mays	34.30	9.00e-137	479.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence