iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Sly-111154

Ensembl Protein ID

Solyc05g056500.1.1

UniProt Accession

K4C2X4; K4C2X4_SOLLC

Protein Name

RING-type E3 ubiquitin transferase

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Solyc05g056500.1	Solyc05g056500.1.1	Solyc05g056500.1.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/U-box	2.10e-30	105.4	8	80

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 2    vpeeflCpIslelMrdPvvlpsGitydrssIekwlasggktcPvtrqplteedlvPnltlrrliqawceenss 74
           +p  f+CpIsl+l++dPv+l++G+tydrssIekwl+ g+ tcPvt+q+l+++++vPn+tlr+li++w++ nss
   Q: 8    IPILFRCPISLDLFKDPVTLCTGQTYDRSSIEKWLSCGNLTCPVTMQKLHDSTIVPNTTLRHLIDRWLQINSS 80
           7889****************************************************************98876 PP

Organism

Solanum lycopersicum

Protein Sequence
(Fasta)

MKEPEVGIPI LFRCPISLDL FKDPVTLCTG QTYDRSSIEK WLSCGNLTCP VTMQKLHDST 60
IVPNTTLRHL IDRWLQINSS HGYDLDYFQT VDDSFVVLKH NLQSKESTLE SKVEALDKVL 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGAAGGAGC CTGAAGTTGG AATTCCCATC TTGTTTAGGT GTCCAATAAG TTTAGATTTG 60
TTTAAAGATC CAGTTACTTT ATGCACAGGC CAAACATATG ACAGATCCAG TATTGAGAAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0808--Transferase

Interpro

IPR011989--ARM-like
IPR016024--ARM-type_fold
IPR003613--Ubox_domain
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS51698--U_BOX

Pfam

PF04564--U-box

SMART

SM00504--Ubox

Gene Ontology

GO:0004842--F:ubiquitin-protein transferase activity

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-002561	Amborella trichopoda	39.43	9.00e-54	203.00
IUUC-Bdi-014442	Brachypodium distachyon	41.28	1.00e-36	146.00
IUUC-Gma-043080	Glycine max	52.41	2.00e-90	325.00
IUUC-Hvu-047498	Hordeum vulgare	54.17	2.00e-16	79.30
IUUC-Lpe-051453	Leersia perrieri	36.68	1.00e-32	133.00
IUUC-Mtr-058668	Medicago truncatula	50.00	3.00e-87	314.00
IUUC-Mac-065385	Musa acuminata	40.60	1.00e-67	249.00
IUUC-Oba-075982	Oryza barthii	70.67	2.00e-29	121.00
IUUC-Ogl-077204	Oryza glaberrima	43.37	7.00e-29	120.00
IUUC-Ogu-078726	Oryza glumaepatula	42.93	7.00e-30	124.00
IUUC-Oin-079338	Oryza indica	43.88	6.00e-31	127.00
IUUC-Ome-081303	Oryza meridionalis	34.79	3.00e-35	141.00
IUUC-Oni-082692	Oryza nivara	43.22	2.00e-29	123.00
IUUC-Opu-083613	Oryza punctata	32.35	3.00e-39	154.00
IUUC-Oru-084341	Oryza rufipogon	42.71	5.00e-29	121.00
IUUC-Osa-086241	Oryza sativa	34.15	4.00e-32	131.00
IUUC-Pop-099942	Populus trichocarpa	51.73	2.00e-87	315.00
IUUC-Ppe-101486	Prunus persica	50.24	3.00e-90	324.00
IUUC-Sit-110225	Setaria italica	71.83	2.00e-29	122.00
IUUC-Stu-112583	Solanum tuberosum	92.82	0.00e+00	749.00
IUUC-Sbi-114119	Sorghum bicolor	37.06	6.00e-40	157.00
IUUC-Ssc-116236	Sus scrofa	35.21	3.00e-07	48.90
IUUC-Tca-121526	Theobroma cacao	49.65	2.00e-72	264.00
IUUC-Tae-122999	Triticum aestivum	39.68	1.00e-40	159.00
IUUC-Tur-126273	Triticum urartu	62.12	1.00e-17	83.20
IUUC-Vvi-131284	Vitis vinifera	50.63	2.00e-91	328.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence