iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Pop-099602

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Transducin family protein

Genbank Nucleotide ID

CM000351

Gene Name

POPTRDRAFT_575319; POPTR_0015s10440g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0015s10440	POPTR_0015s10440.1	POPTR_0015s10440.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	2.90e-06	28.5	298	330

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 3    tdsvtclaf.sd.tllvsGsdDgtikvWDlrtg 33
           ++s++++a  ++ + ++s++ D  +++WD++t 
   Q: 298  SGSIRSMARhPElPVIASCGLDSYLRLWDIKTR 330
           578899887788899**************8875 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MPRTTTLECP GCPPLRALTF DSLGLIKVIE SRGERGIPQV VERWGDPDSS KCVLAASIDD 60
RKKDPLLAVA RKNGEVEVLN PLNGEIRVVF SNVVEDGVQP EDDAIAGLHL FKRERSTGSC 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATCCTCTCTC TCTCTCTCTC TTTCCCTCTC TCTGTTTGTA TTGGCGAAGT GAAACTGAAT 60
ATCGTAAAAC AATGCCGCGA ACTACGACAT TAGAGTGTCC TGGTTGCCCT CCACTTCGAG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

SMART

SM00320--WD40

Gene Ontology

GO:0005730--C:nucleolus
GO:0030687--C:preribosome, large subunit precursor
GO:0042273--P:ribosomal large subunit biogenesis

KEGG

pop:POPTR_0015s10440g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000787	Aegilops tauschii	58.84	1.00e-122	432.00
IUUC-Aml-001460	Ailuropoda melanoleuca	37.93	1.00e-25	110.00
IUUC-Atr-002657	Amborella trichopoda	60.39	1.00e-127	449.00
IUUC-Aly-006380	Arabidopsis lyrata	66.48	4.00e-140	490.00
IUUC-Ath-007686	Arabidopsis thaliana	65.92	2.00e-139	488.00
IUUC-Bta-013382	Bos taurus	39.08	5.00e-27	114.00
IUUC-Bdi-014280	Brachypodium distachyon	61.34	1.00e-125	442.00
IUUC-Bra-017855	Brassica rapa	64.79	7.00e-141	493.00
IUUC-Cja-018933	Callithrix jacchus	38.51	3.00e-26	112.00
IUUC-Cfa-020634	Canis familiaris	31.22	2.00e-26	113.00
IUUC-Cpo-022089	Cavia porcellus	37.93	4.00e-25	108.00
IUUC-Csa-023835	Chlorocebus sabaeus	39.08	4.00e-27	114.00
IUUC-Cin-025691	Ciona intestinalis	31.45	1.00e-22	100.00
IUUC-Dre-028473	Danio rerio	34.86	1.00e-29	122.00
IUUC-Dno-029687	Dasypus novemcinctus	36.78	1.00e-23	103.00
IUUC-Dme-031982	Drosophila melanogaster	30.46	6.00e-13	68.20
IUUC-Ete-032407	Echinops telfairi	43.33	9.00e-16	77.00
IUUC-Fca-036584	Felis catus	38.51	3.00e-26	112.00
IUUC-Gma-044150	Glycine max	69.10	1.00e-145	509.00
IUUC-Ggo-044955	Gorilla gorilla	38.51	3.00e-26	112.00
IUUC-Hvu-047119	Hordeum vulgare	59.66	7.00e-98	350.00
IUUC-Itr-048987	Ictidomys tridecemlineatus	37.93	9.00e-25	107.00
IUUC-Laf-054015	Loxodonta africana	38.51	8.00e-27	114.00
IUUC-Mcc-055589	Macaca mulatta	38.51	3.00e-26	112.00
IUUC-Meu-056160	Macropus eugenii	36.61	2.00e-12	66.20
IUUC-Mtr-057719	Medicago truncatula	66.48	1.00e-140	492.00
IUUC-Mmr-060801	Microcebus murinus	38.51	6.00e-26	111.00
IUUC-Mmu-063487	Mus musculus	38.73	1.00e-26	113.00
IUUC-Mpu-066542	Mustela putorius furo	37.93	1.00e-25	110.00
IUUC-Mlu-067520	Myotis lucifugus	37.93	4.00e-25	108.00
IUUC-Nle-069422	Nomascus leucogenys	37.10	3.00e-26	112.00
IUUC-Ocu-073886	Oryctolagus cuniculus	38.51	2.00e-26	112.00
IUUC-Obr-076206	Oryza brachyantha	59.94	5.00e-111	394.00
IUUC-Ogl-077112	Oryza glaberrima	61.17	2.00e-124	438.00
IUUC-Ogu-078172	Oryza glumaepatula	57.37	1.00e-111	396.00
IUUC-Oin-080070	Oryza indica	61.17	3.00e-124	437.00
IUUC-Olo-080534	Oryza longistaminata	52.68	4.00e-98	351.00
IUUC-Ome-081869	Oryza meridionalis	59.51	2.00e-121	428.00
IUUC-Opu-083828	Oryza punctata	59.56	2.00e-121	428.00
IUUC-Oru-084690	Oryza rufipogon	57.63	2.00e-116	411.00
IUUC-Oga-088865	Otolemur garnettii	37.36	9.00e-25	107.00
IUUC-Oar-090030	Ovis aries	38.51	1.00e-26	113.00
IUUC-Pan-092461	Papio anubis	38.51	4.00e-26	111.00
IUUC-Ppa-095623	Physcomitrella patens	49.60	2.00e-96	345.00
IUUC-Pab-098290	Pongo abelii	38.51	4.00e-26	111.00
IUUC-Pca-100383	Procavia capensis	38.51	3.00e-25	108.00
IUUC-Ppe-101867	Prunus persica	76.88	7.00e-166	576.00
IUUC-Rno-105494	Rattus norvegicus	38.15	1.00e-25	110.00
IUUC-Sit-110466	Setaria italica	60.34	9.00e-118	416.00
IUUC-Sbi-113854	Sorghum bicolor	61.17	2.00e-124	438.00
IUUC-Ssc-116144	Sus scrofa	38.51	9.00e-27	113.00
IUUC-Tae-123391	Triticum aestivum	61.24	8.00e-126	443.00
IUUC-Tur-126054	Triticum urartu	60.34	6.00e-99	354.00
IUUC-Tbe-127232	Tupaia belangeri	28.16	2.00e-10	59.30
IUUC-Ttr-128529	Tursiops truncatus	37.93	4.00e-25	108.00
IUUC-Vpa-130703	Vicugna pacos	42.11	6.00e-19	87.80
IUUC-Vvi-131680	Vitis vinifera	75.14	6.00e-160	556.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence