iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Sbi-114032

Ensembl Protein ID

Sb07g004180.1

UniProt Accession

A0A1B6PFN9; A0A1B6PFN9_SORBI

Genbank Protein ID

KXG24503.1

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

CM000766

Gene Name

SORBI_007G051700

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Sb07g004180	Sb07g004180.1	Sb07g004180.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	2.40e-18	66.3	450	485
UBD/Beta-Prp	5.00e-48	164.6	404	685

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf..sd.tl.lvsGsdDgtikvWDlrtg 33
           H ++v+++af  ++ tl +++++dD+ ikvWD  tg
   Q: 450  HIGGVNDIAFshPNkTLsIITCGDDKLIKVWDAQTG 485
           9999*******97766679*************8877 PP

UBD/Beta-Prp

   S: 7    ghhksvitcvkfspdksllatgsrdgtikvwdvttgkl...lrslsgheaevtavkfspdgk..ilvtgseDrtikvwdlstgkcvhtlkghedsv 97
           ++ +sv +   +spd+++l +++  + ++ + + +       +++  h ++v+++ fs+  k   ++t+++D++ikvwd +tg+  +t++ghe+ v
   Q: 404  DAAISVNR-CLWSPDGTILGVAFSKHIVQTYTFVPNGDlrqQAEIDAHIGGVNDIAFSHPNKtlSIITCGDDKLIKVWDAQTGQKQYTFEGHEAPV 498
           44455555.45679999999999999999999876544366778899************9998889****************************** PP
   S: 98   lslsfsp..sgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGsl....DrtvrlWdlktgkllrtltgghtdsvysls 187
           +s+  +   s +++ s+  d  i+ w  +      + +    ++ ++++++ dg  l+s+++    D+ +  W+   g + rt  g  ++s   ++
   Q: 499  YSVCPHYkeSIQFIFSTAIDGKIKAWLYDCLGSRVDYD-APGHWCTTMAYSADGTRLFSCGTskegDSHLVEWNETEGAIKRTYNGFRKRSLGVVQ 593
           **865554377**************9555444443244.455699999999999888888764555888888************************ PP
   S: 188  fdsngkelvsgsldgtvklwdlqtgecvrtlnghtdnvks..vrfspnderlvsgssDgsiriW.dlrsgdllktlqlhn...........s 265
           fd ++++++++++   vk+wd+ +++++ t  +    + s  +rf +++ +l++++sD+ i+i  +++ + ll++l+ ++           +
   Q: 594  FDTTRNRFLAAGDEFLVKFWDMDNNNILTTTDCDGGLPASprLRFNREGSLLAVTTSDNGIKILaNTDGQRLLRMLESRAfegsrgppqqiN 685
           ******************************99999888762266779****************77999999999988776666666655551 PP

Organism

Sorghum bicolor

Protein Sequence
(Fasta)

MGFFLEPCLA GRAFLMRFAV ACPCRLEQES GFYFNMKHFE DLVQGGEWDE VEKYLSGFTK 60
VEDNRYSMKI FFEIRKQKYL EALDRHDRAK AVEILVKDLK VFASFNEELF KEITQLLTLE 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGGTTTTT TTTTGGAGCC TTGCCTTGCT GGGCGAGCAT TTCTGATGCG TTTTGCGGTT 60
GCTTGCCCCT GCAGGTTGGA GCAGGAGTCG GGCTTCTACT TCAACATGAA GCACTTCGAG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR006595--CTLH_C
IPR006594--LisH
IPR011045--N2O_reductase_N
IPR011047--Quinoprotein_ADH-like_supfam
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS50897--CTLH
PS50896--LISH
PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00668--CTLH
SM00667--LisH
SM00320--WD40

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000215	Aegilops tauschii	91.82	0.00e+00	2092.00
IUUC-Bdi-014941	Brachypodium distachyon	91.19	0.00e+00	2055.00
IUUC-Lpe-051683	Leersia perrieri	92.31	0.00e+00	2080.00
IUUC-Mac-064578	Musa acuminata	84.63	0.00e+00	1951.00
IUUC-Oba-075179	Oryza barthii	92.31	0.00e+00	2078.00
IUUC-Obr-076730	Oryza brachyantha	92.41	0.00e+00	2085.00
IUUC-Ogl-076958	Oryza glaberrima	92.50	0.00e+00	2127.00
IUUC-Ogu-078424	Oryza glumaepatula	92.31	0.00e+00	2078.00
IUUC-Oin-079972	Oryza indica	92.59	0.00e+00	2088.00
IUUC-Olo-080979	Oryza longistaminata	92.50	0.00e+00	2085.00
IUUC-Ome-081212	Oryza meridionalis	92.31	0.00e+00	2075.00
IUUC-Oni-082820	Oryza nivara	92.31	0.00e+00	2078.00
IUUC-Opu-083223	Oryza punctata	90.00	0.00e+00	2016.00
IUUC-Oru-084418	Oryza rufipogon	90.99	0.00e+00	2075.00
IUUC-Osa-086275	Oryza sativa	92.59	0.00e+00	2088.00
IUUC-Sit-110121	Setaria italica	97.89	0.00e+00	2192.00
IUUC-Sly-111268	Solanum lycopersicum	74.96	0.00e+00	1736.00
IUUC-Tca-121774	Theobroma cacao	77.20	0.00e+00	1732.00
IUUC-Tae-125673	Triticum aestivum	91.82	0.00e+00	2092.00
IUUC-Tur-126718	Triticum urartu	90.48	0.00e+00	2056.00
IUUC-Vvi-131109	Vitis vinifera	78.94	0.00e+00	1802.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence