iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Sit-109837

Ensembl Protein ID

Si034238m

UniProt Accession

K4A5T4; K4A5T4_SETIT

Genbank Protein ID

KQK88534.1

Protein Name

Katanin p80 WD40 repeat-containing subunit B1 homolog

Genbank Nucleotide ID

CM003536

Gene Name

LOC101782125; SETIT_034238mg

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Si034238m.g	Si034676m	Si034676m
Si034238m.g	Si034238m	Si034238m

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	2.50e-33	113.6	141	179
UBD/Beta-Prp	8.30e-53	180.4	14	260

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvllk 37
           gHt ++  l+f +d + +vsG+ D+++k+WDl+ g+ll+
   Q: 141  GHTRRIDVLKFtPDgRWIVSGGADNSVKIWDLTAGKLLH 179
           89999999****99999******************9986 PP

UBD/Beta-Prp

   S: 8    hhksvitcvkf.spdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfspsg 106
           +h s ++c kf  + +++l+tg++d  + +w v ++++l slsg +++v +v+f++++ ++  g+  +tik+wd++  k v+t++gh ++  sl+f+p g
   Q: 14   AHASNVNCAKFgRRTSRILITGGEDLQVNLWAVGKPSALLSLSGLTSPVESVSFDSSELTIGAGAASGTIKIWDVEEAKVVRTFTGHRSNCASLDFHPFG 113
           68889999*************************************************9888889999********************************* PP
   S: 107  dklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsfdsngkelvsgsldgtvkl 206
           ++l+sGs+d   ++wd++++ c++ t +gh++ + ++++ pdg+ +vsG++D+ v++Wdl  gkll++++  h+++v++l+f++  + l++gs+d+t+k+
   Q: 114  EFLASGSSDTNMKIWDIRKKRCIH-TYKGHTRRIDVLKFTPDGRWIVSGGADNSVKIWDLTAGKLLHDFSL-HEGPVNCLDFHPHEFLLATGSTDKTLKF 211
           ************************.********************************************98.**************************** PP
   S: 207  wdlqtgec........vrtlnghtdnvksvrfspnderlvsgssDgsiri 248
           wdl+t e          r++ +  + v+s++f ++++ l +g  ++s+++
   Q: 212  WDLETFELigssgpenSREYFEPASIVRSMKFNSDGKTLFCGL-HQSLKV 260
           ****555555555555999******************999984.666655 PP

Organism

Setaria italica

Functional Description
(View)

May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays.

Protein Sequence
(Fasta)

MATKRAYKLQ EFVAHASNVN CAKFGRRTSR ILITGGEDLQ VNLWAVGKPS ALLSLSGLTS 60
PVESVSFDSS ELTIGAGAAS GTIKIWDVEE AKVVRTFTGH RSNCASLDFH PFGEFLASGS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AACAACTGCG GCGAAGTTTT AGCGCCAGCG AAGAGGCCGC GGGCGGGAGG ATCCTGAGAG 60
CGAGCGAGGC AATCCGCGTC CTTCTCTCCC CCGCAGCGGG TGTCCATGCT ATTGATGACG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0206--Cytoskeleton
KW-0493--Microtubule
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR026962--Katanin_bsu1
IPR028021--Katanin_C-terminal
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF13925--Katanin_con80
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0008352--C:katanin complex
GO:0005874--C:microtubule
GO:0051013--P:microtubule severing

KEGG

sita:101782125

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000873	Aegilops tauschii	52.04	0.00e+00	775.00
IUUC-Bdi-014552	Brachypodium distachyon	62.17	0.00e+00	1001.00
IUUC-Hvu-047781	Hordeum vulgare	59.20	0.00e+00	947.00
IUUC-Lpe-051597	Leersia perrieri	74.46	0.00e+00	681.00
IUUC-Oba-075845	Oryza barthii	63.86	0.00e+00	1059.00
IUUC-Obr-076798	Oryza brachyantha	64.07	0.00e+00	1104.00
IUUC-Ogu-079022	Oryza glumaepatula	65.49	0.00e+00	1099.00
IUUC-Oin-080135	Oryza indica	65.94	0.00e+00	1106.00
IUUC-Olo-080665	Oryza longistaminata	63.32	0.00e+00	920.00
IUUC-Ome-081884	Oryza meridionalis	65.43	0.00e+00	1082.00
IUUC-Oni-082726	Oryza nivara	63.89	0.00e+00	1056.00
IUUC-Opu-083637	Oryza punctata	65.49	0.00e+00	1117.00
IUUC-Oru-085123	Oryza rufipogon	65.83	0.00e+00	1103.00
IUUC-Osa-086267	Oryza sativa	65.83	0.00e+00	1103.00
IUUC-Smo-109409	Selaginella moellendorffii	41.17	9.00e-165	573.00
IUUC-Tae-123176	Triticum aestivum	58.59	0.00e+00	916.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence