iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Bdi-014549

Ensembl Protein ID

BRADI1G78470.1

UniProt Accession

I1HAV9; I1HAV9_BRADI

Genbank Protein ID

KQK24161.1

Protein Name

Coatomer subunit alpha

Genbank Nucleotide ID

CM000880

Gene Name

LOC100844017; BRADI_1g78470

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
BRADI1G78470	BRADI1G78470.1	BRADI1G78470.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	2.60e-38	128.9	50	86
UBD/Beta-Prp	4.70e-77	259.6	3	323

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvll 36
           H ++v++++f  + +l+vsG+dD +ikvW+++t+++l
   Q: 50   HDGPVRGVHFhKTqPLFVSGGDDYKIKVWNYKTHRCL 86
           99*********4459********************98 PP

UBD/Beta-Prp

   S: 4    tlkghhksvitcvkfspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvl 98
           t +++++++++ + f+p +++++++  +g ++ wd+++g+ll ++ +h+++v+ v f+++++++v+g++D+ ikvw+++t  c+ tl+gh d+++
   Q: 3    TKFETKSNRVKGLSFHPRRPWILASLHSGVVQMWDYRMGTLLDRFDEHDGPVRGVHFHKTQPLFVSGGDDYKIKVWNYKTHRCLFTLHGHLDYIR 97
           67889999*************************************************************************************** PP
   S: 99   slsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdl..........................k 167
           +++f+ +  ++vs+s+d+tir+w++++++c+  +l+gh++ v+c+++hp+++l+vs+slD+tvr+Wd+                           
   Q: 98   TVQFHDEHPWIVSASDDQTIRIWNWQSRTCVA-VLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIgalrkkssspaddimrltqmntdlfgG 191
           ********************************.********************************************999999666655555553 PP
   S: 168  tgkllrtl.......tgghtdsvyslsfdsngkelvsgsldgtvklwdlqtgec..vrtlnghtdnvksvrfspnderlvsgssDgsiriWdlrs 253
                           +gh++ v++ sf+++ + ++sg++d++vklw +  ++   v+tl+gh +nv++v f+ +++++vs s+D+sir+Wd ++
   Q: 192  -------IdavvkyvLEGHDRGVNWASFHPTLPLIISGADDRQVKLWRMNDTKAweVDTLRGHMNNVSCVLFHAKQDIIVSNSEDKSIRVWDATK 279
           .......04444445555********************************777668*************************************** PP
   S: 254  gdllktlqlhnssvisvavlsfgdnvlvlgsedskvniwklkknep 299
           ++ ++t+ +++++++  a+ +++ n l++g  ds   ++kl++++p
   Q: 280  RTGIQTFRREHDRFWVLAA-HPEMNLLAAG-HDSGMIVFKLERERP 323
           *******************.6666655555.689999999988765 PP

Organism

Brachypodium distachyon

Functional Description
(View)

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network.

Protein Sequence
(Fasta)

MLTKFETKSN RVKGLSFHPR RPWILASLHS GVVQMWDYRM GTLLDRFDEH DGPVRGVHFH 60
KTQPLFVSGG DDYKIKVWNY KTHRCLFTLH GHLDYIRTVQ FHDEHPWIVS ASDDQTIRIW 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGCTGACCA AGTTCGAGAC CAAGAGCAAC CGGGTCAAGG GCCTCTCCTT CCACCCGCGC 60
CGCCCATGGA TCCTCGCCAG CCTCCACAGC GGGGTCGTCC AGATGTGGGA CTACCGCATG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0931--ER-Golgi transport
KW-0333--Golgi apparatus
KW-0472--Membrane
KW-0653--Protein transport
KW-1185--Reference proteome
KW-0813--Transport
KW-0853--WD repeat

Interpro

IPR016391--Coatomer_asu
IPR010714--Coatomer_asu_C
IPR006692--Coatomer_WD-assoc_reg
IPR020472--G-protein_beta_WD-40_rep
IPR011990--TPR-like_helical_dom
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF04053--Coatomer_WDAD
PF06957--COPI_C
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0030126--C:COPI vesicle coat
GO:0000139--C:Golgi membrane
GO:0005198--F:structural molecule activity
GO:0006888--P:ER to Golgi vesicle-mediated transport
GO:0006891--P:intra-Golgi vesicle-mediated transport
GO:0006886--P:intracellular protein transport
GO:0006890--P:retrograde vesicle-mediated transport, Golgi to ER

KEGG

bdi:100844017

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001758	Ailuropoda melanoleuca	54.09	0.00e+00	1338.00
IUUC-Atr-002493	Amborella trichopoda	79.49	0.00e+00	1991.00
IUUC-Apl-003385	Anas platyrhynchos	49.68	0.00e+00	1029.00
IUUC-Aca-005154	Anolis carolinensis	77.45	5.00e-94	335.00
IUUC-Aly-006020	Arabidopsis lyrata	76.33	0.00e+00	1930.00
IUUC-Ath-007058	Arabidopsis thaliana	76.21	0.00e+00	1932.00
IUUC-Ago-007992	Ashbya gossypii	43.47	0.00e+00	976.00
IUUC-Acl-008027	Aspergillus clavatus	53.43	0.00e+00	973.00
IUUC-Afl-008644	Aspergillus flavus	56.30	0.00e+00	981.00
IUUC-Afu-008964	Aspergillus fumigatus	47.29	0.00e+00	1117.00
IUUC-Ani-009379	Aspergillus nidulans	55.60	0.00e+00	978.00
IUUC-Ang-009756	Aspergillus niger	55.78	0.00e+00	981.00
IUUC-Aor-010174	Aspergillus oryzae	56.30	0.00e+00	981.00
IUUC-Ate-010302	Aspergillus terreus	47.11	0.00e+00	1134.00
IUUC-Ame-011229	Astyanax mexicanus	53.08	0.00e+00	1308.00
IUUC-Bgr-012300	Blumeria graminis	46.73	0.00e+00	1068.00
IUUC-Bta-012524	Bos taurus	54.56	0.00e+00	1335.00
IUUC-Bci-013781	Botrytis cinerea	55.94	0.00e+00	970.00
IUUC-Bol-015925	Brassica oleracea	74.80	0.00e+00	1895.00
IUUC-Bra-016978	Brassica rapa	75.68	0.00e+00	1917.00
IUUC-Cel-018115	Caenorhabditis elegans	54.69	0.00e+00	927.00
IUUC-Cja-019107	Callithrix jacchus	53.37	0.00e+00	1322.00
IUUC-Cfa-020675	Canis familiaris	53.55	0.00e+00	1311.00
IUUC-Cpo-021813	Cavia porcellus	54.47	0.00e+00	1347.00
IUUC-Csa-023523	Chlorocebus sabaeus	54.52	0.00e+00	1356.00
IUUC-Cho-024704	Choloepus hoffmanni	68.37	5.00e-130	458.00
IUUC-Cin-025572	Ciona intestinalis	50.24	0.00e+00	1241.00
IUUC-Csv-025864	Ciona savignyi	56.31	0.00e+00	969.00
IUUC-Cgl-026510	Colletotrichum gloeosporioides	55.74	0.00e+00	983.00
IUUC-Cne-027053	Cryptococcus neoformans	50.36	0.00e+00	1179.00
IUUC-Dno-029303	Dasypus novemcinctus	54.44	0.00e+00	1349.00
IUUC-Dor-030290	Dipodomys ordii	52.11	1.00e-163	570.00
IUUC-Dse-031543	Dothistroma septosporum	45.74	0.00e+00	1056.00
IUUC-Dme-031945	Drosophila melanogaster	59.13	0.00e+00	1009.00
IUUC-Ete-032873	Echinops telfairi	59.12	0.00e+00	1031.00
IUUC-Eca-033773	Equus caballus	53.54	0.00e+00	1311.00
IUUC-Eeu-034874	Erinaceus europaeus	41.30	0.00e+00	655.00
IUUC-Fca-035739	Felis catus	53.78	0.00e+00	1308.00
IUUC-Fal-037263	Ficedula albicollis	50.85	0.00e+00	1196.00
IUUC-Fox-037738	Fusarium oxysporum	47.36	0.00e+00	1117.00
IUUC-Fso-038153	Fusarium solani	46.55	0.00e+00	1096.00
IUUC-Ggr-039931	Gaeumannomyces graminis	54.53	0.00e+00	966.00
IUUC-Gga-040590	Gallus gallus	54.09	0.00e+00	1347.00
IUUC-Gac-041318	Gasterosteus aculeatus	53.90	0.00e+00	1331.00
IUUC-Gma-043894	Glycine max	75.82	0.00e+00	1961.00
IUUC-Ggo-045029	Gorilla gorilla	54.05	0.00e+00	1345.00
IUUC-Hsa-046078	Homo sapiens	54.05	0.00e+00	1344.00
IUUC-Itr-048881	Ictidomys tridecemlineatus	45.94	0.00e+00	746.00
IUUC-Kpa-049256	Komagataella pastoris	52.24	0.00e+00	912.00
IUUC-Lch-049706	Latimeria chalumnae	54.05	0.00e+00	1342.00
IUUC-Lpe-051316	Leersia perrieri	88.83	0.00e+00	2208.00
IUUC-Loc-051867	Lepisosteus oculatus	49.53	0.00e+00	814.00
IUUC-Lma-053138	Leptosphaeria maculans	55.35	0.00e+00	1000.00
IUUC-Mcc-055836	Macaca mulatta	54.06	0.00e+00	1337.00
IUUC-Meu-056238	Macropus eugenii	55.77	0.00e+00	766.00
IUUC-Mor-057172	Magnaporthe oryzae	46.45	0.00e+00	1088.00
IUUC-Mpo-057300	Magnaporthe poae	46.63	0.00e+00	1078.00
IUUC-Mtr-058248	Medicago truncatula	76.09	0.00e+00	1958.00
IUUC-Mla-059019	Melampsora laricipopulina	57.40	0.00e+00	1046.00
IUUC-Mga-059499	Meleagris gallopavo	54.00	0.00e+00	1342.00
IUUC-Mmr-061102	Microcebus murinus	54.05	0.00e+00	1330.00
IUUC-Mdo-062594	Monodelphis domestica	54.80	0.00e+00	1367.00
IUUC-Mmu-063736	Mus musculus	53.64	0.00e+00	1334.00
IUUC-Mac-065398	Musa acuminata	76.27	0.00e+00	1944.00
IUUC-Mpu-066701	Mustela putorius furo	54.64	0.00e+00	1349.00
IUUC-Mlu-067392	Myotis lucifugus	54.12	0.00e+00	1344.00
IUUC-Nfi-068270	Neosartorya fischeri	55.66	0.00e+00	976.00
IUUC-Ncr-068892	Neurospora crassa	56.05	0.00e+00	978.00
IUUC-Nle-069634	Nomascus leucogenys	64.82	0.00e+00	939.00
IUUC-Opr-070952	Ochotona princeps	41.77	0.00e+00	643.00
IUUC-Ont-072488	Oreochromis niloticus	53.68	0.00e+00	1321.00
IUUC-Ocu-074211	Oryctolagus cuniculus	54.36	0.00e+00	1345.00
IUUC-Oba-075761	Oryza barthii	89.14	0.00e+00	2228.00
IUUC-Obr-076429	Oryza brachyantha	88.93	0.00e+00	2221.00
IUUC-Ogl-077364	Oryza glaberrima	89.24	0.00e+00	2232.00
IUUC-Ogu-078257	Oryza glumaepatula	89.20	0.00e+00	2167.00
IUUC-Oin-079274	Oryza indica	89.08	0.00e+00	2228.00
IUUC-Olo-080466	Oryza longistaminata	93.76	0.00e+00	1634.00
IUUC-Ome-081668	Oryza meridionalis	82.42	0.00e+00	1871.00
IUUC-Oni-082874	Oryza nivara	89.16	0.00e+00	2227.00
IUUC-Opu-083885	Oryza punctata	89.33	0.00e+00	2231.00
IUUC-Oru-084274	Oryza rufipogon	89.16	0.00e+00	2229.00
IUUC-Osa-085565	Oryza sativa	89.16	0.00e+00	2229.00
IUUC-Ola-086921	Oryzias latipes	52.80	0.00e+00	1298.00
IUUC-Olu-087639	Ostreococcus lucimarinus	60.96	0.00e+00	1518.00
IUUC-Oga-087991	Otolemur garnettii	52.30	0.00e+00	1265.00
IUUC-Oar-089590	Ovis aries	54.48	0.00e+00	1347.00
IUUC-Ptr-090808	Pan troglodytes	54.13	0.00e+00	1346.00
IUUC-Pan-092475	Papio anubis	54.52	0.00e+00	1348.00
IUUC-Psi-093044	Pelodiscus sinensis	53.91	0.00e+00	881.00
IUUC-Pno-094839	Phaeosphaeria nodorum	45.82	0.00e+00	1041.00
IUUC-Ppa-095785	Physcomitrella patens	67.89	0.00e+00	1750.00
IUUC-Pfo-097493	Poecilia formosa	53.97	0.00e+00	1325.00
IUUC-Pab-098497	Pongo abelii	54.44	0.00e+00	1355.00
IUUC-Pop-099992	Populus trichocarpa	78.03	0.00e+00	1959.00
IUUC-Ppe-101392	Prunus persica	78.61	0.00e+00	2019.00
IUUC-Pva-102126	Pteropus vampyrus	52.13	0.00e+00	1273.00
IUUC-Pgr-103376	Puccinia graminis	50.00	0.00e+00	1214.00
IUUC-Ptt-103978	Puccinia triticina	50.51	0.00e+00	801.00
IUUC-Pte-104126	Pyrenophora teres	54.83	0.00e+00	952.00
IUUC-Pyt-104778	Pyrenophora triticirepentis	46.35	7.00e-180	624.00
IUUC-Rno-105428	Rattus norvegicus	54.17	0.00e+00	1341.00
IUUC-Sce-106464	Saccharomyces cerevisiae	42.13	0.00e+00	936.00
IUUC-Sha-107301	Sarcophilus harrisii	53.88	0.00e+00	1334.00
IUUC-Spo-108217	Schizosaccharomyces pombe	43.83	0.00e+00	1035.00
IUUC-Ssl-108643	Sclerotinia sclerotiorum	47.44	0.00e+00	1109.00
IUUC-Smo-109582	Selaginella moellendorffii	65.74	0.00e+00	1708.00
IUUC-Sit-109697	Setaria italica	89.42	0.00e+00	2236.00
IUUC-Sly-111759	Solanum lycopersicum	77.95	0.00e+00	2016.00
IUUC-Stu-112564	Solanum tuberosum	78.11	0.00e+00	2014.00
IUUC-Sar-113313	Sorex araneus	42.04	0.00e+00	629.00
IUUC-Sbi-114388	Sorghum bicolor	89.66	0.00e+00	2239.00
IUUC-Sre-115209	Sporisorium reilianum	54.95	0.00e+00	995.00
IUUC-Ssc-115933	Sus scrofa	54.56	0.00e+00	1349.00
IUUC-Tru-117772	Takifugu rubripes	53.45	0.00e+00	1295.00
IUUC-Tsy-119105	Tarsius syrichta	51.44	0.00e+00	1019.00
IUUC-Tni-120556	Tetraodon nigroviridis	41.06	0.00e+00	872.00
IUUC-Tca-121545	Theobroma cacao	77.46	0.00e+00	2010.00
IUUC-Tre-121951	Trichoderma reesei	55.34	0.00e+00	972.00
IUUC-Tvi-122359	Trichoderma virens	46.48	0.00e+00	1098.00
IUUC-Tme-127170	Tuber melanosporum	47.90	0.00e+00	1151.00
IUUC-Tbe-127882	Tupaia belangeri	68.06	4.00e-127	448.00
IUUC-Ttr-128217	Tursiops truncatus	52.32	0.00e+00	1273.00
IUUC-Uma-129337	Ustilago maydis	55.07	0.00e+00	993.00
IUUC-Vda-129828	Verticillium dahliae	47.33	0.00e+00	1096.00
IUUC-Vpa-130537	Vicugna pacos	53.89	0.00e+00	1325.00
IUUC-Vvi-130958	Vitis vinifera	78.44	0.00e+00	2000.00
IUUC-Xma-133138	Xiphophorus maculatus	53.97	0.00e+00	1326.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence