iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Sbi-114388

Ensembl Protein ID

Sb01g010390.1

UniProt Accession

C5WN40; C5WN40_SORBI

Genbank Protein ID

EER93584.1

Protein Name

Coatomer subunit alpha

Genbank Nucleotide ID

CM000760

Gene Name

SORBI_001G117800

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Sb01g010390	Sb01g010390.1	Sb01g010390.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	4.60e-39	131.5	50	86
UBD/Beta-Prp	1.60e-77	261.5	3	323

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf..sdtllvsGsdDgtikvWDlrtgvll 36
           H ++v++++f  + +l+vsG+dD +ikvW+++t+++l
   Q: 50   HDGPVRGVHFhaTQPLFVSGGDDYKIKVWNYKTHRCL 86
           99*********6449********************98 PP

UBD/Beta-Prp

   S: 4    tlkghhksvitcvkfspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvls 99
           t +++++++++ + f+p +++++++  +g i+ wd+++g+ll ++ +h+++v+ v f+ +++++v+g++D+ ikvw+++t  c+ tl+gh d++++
   Q: 3    TKFETKSNRVKGLSFHPRRPWILASLHSGVIQMWDYRMGTLLDRFDEHDGPVRGVHFHATQPLFVSGGDDYKIKVWNYKTHRCLFTLHGHLDYIRT 98
           67889999**************************************************************************************** PP
   S: 100  lsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdl...........................kt 168
           ++f+ +  ++vs+s+d+tir+w++++++c+  +l+gh++ v+c+++hp+++l+vs+slD+tvr+Wd+                             
   Q: 99   VQFHHEYPWIVSASDDQTIRIWNWQSRTCVA-VLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIgalrkktvspaddilrltqmntdlfggVD 193
           *******************************.*************************************************977777777776444 PP
   S: 169  gkllrtltgghtdsvyslsfdsngkelvsgsldgtvklwdlqtgec..vrtlnghtdnvksvrfspnderlvsgssDgsiriWdlrsgdllktlql 262
           + + + l+g h++ v++ sf+++ + +vsg++d++vklw +  ++   v+tl+gh +nv++v f+ +++++vs s+D+siriWd ++++ ++t+ +
   Q: 194  AVVKYVLEG-HDRGVNWASFHPTLPLIVSGADDRQVKLWRMNDTKAweVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRIWDATKRTGIQTFRR 288
           444444466.********************************777668************************************************ PP
   S: 263  hnssvisvavlsfgdnvlvlgsedskvniwklkknep 299
           ++++++  a+ +++ n l++g  ds   ++kl++++p
   Q: 289  EHDRFWILAA-HPEMNLLAAG-HDSGMIVFKLERERP 323
           **********.6666655555.689999999988765 PP

Organism

Sorghum bicolor

Functional Description
(View)

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network.

Protein Sequence
(Fasta)

MLTKFETKSN RVKGLSFHPR RPWILASLHS GVIQMWDYRM GTLLDRFDEH DGPVRGVHFH 60
ATQPLFVSGG DDYKIKVWNY KTHRCLFTLH GHLDYIRTVQ FHHEYPWIVS ASDDQTIRIW 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGCTGACCA AGTTCGAGAC GAAGAGCAAC CGGGTGAAGG GCCTGAGTTT CCACCCGCGT 60
CGGCCATGGA TCCTGGCGAG TCTCCACAGC GGGGTGATCC AGATGTGGGA CTACCGCATG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0931--ER-Golgi transport
KW-0333--Golgi apparatus
KW-0472--Membrane
KW-0653--Protein transport
KW-1185--Reference proteome
KW-0813--Transport
KW-0853--WD repeat

Interpro

IPR016391--Coatomer_asu
IPR010714--Coatomer_asu_C
IPR006692--Coatomer_WD-assoc_reg
IPR020472--G-protein_beta_WD-40_rep
IPR011048--Haem_d1
IPR011990--TPR-like_helical_dom
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF04053--Coatomer_WDAD
PF06957--COPI_C
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0030126--C:COPI vesicle coat
GO:0000139--C:Golgi membrane
GO:0005198--F:structural molecule activity
GO:0006888--P:ER to Golgi vesicle-mediated transport
GO:0006891--P:intra-Golgi vesicle-mediated transport
GO:0006886--P:intracellular protein transport
GO:0006890--P:retrograde vesicle-mediated transport, Golgi to ER

KEGG

sbi:SORBI_01g010390

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000064	Aegilops tauschii	92.45	0.00e+00	2263.00
IUUC-Aml-001758	Ailuropoda melanoleuca	54.55	0.00e+00	1360.00
IUUC-Atr-002493	Amborella trichopoda	80.46	0.00e+00	1977.00
IUUC-Apl-003385	Anas platyrhynchos	49.86	0.00e+00	1039.00
IUUC-Aca-005154	Anolis carolinensis	78.43	2.00e-95	340.00
IUUC-Aly-006020	Arabidopsis lyrata	78.65	0.00e+00	1946.00
IUUC-Ath-007058	Arabidopsis thaliana	77.91	0.00e+00	1946.00
IUUC-Ago-007992	Ashbya gossypii	43.40	0.00e+00	975.00
IUUC-Acl-008027	Aspergillus clavatus	46.78	0.00e+00	1101.00
IUUC-Afl-008644	Aspergillus flavus	48.06	0.00e+00	1113.00
IUUC-Afu-008964	Aspergillus fumigatus	46.96	0.00e+00	1108.00
IUUC-Ani-009379	Aspergillus nidulans	55.11	0.00e+00	972.00
IUUC-Ang-009756	Aspergillus niger	47.28	0.00e+00	1121.00
IUUC-Aor-010174	Aspergillus oryzae	48.09	0.00e+00	1113.00
IUUC-Ate-010302	Aspergillus terreus	47.73	0.00e+00	1147.00
IUUC-Ame-011229	Astyanax mexicanus	53.60	0.00e+00	1314.00
IUUC-Bgr-012300	Blumeria graminis	46.86	0.00e+00	1081.00
IUUC-Bta-012524	Bos taurus	55.03	0.00e+00	1357.00
IUUC-Bci-013781	Botrytis cinerea	47.06	0.00e+00	1120.00
IUUC-Bdi-014549	Brachypodium distachyon	89.66	0.00e+00	2281.00
IUUC-Bol-015967	Brassica oleracea	77.75	0.00e+00	1801.00
IUUC-Bra-016978	Brassica rapa	77.15	0.00e+00	1929.00
IUUC-Cel-018115	Caenorhabditis elegans	55.05	0.00e+00	938.00
IUUC-Cja-019107	Callithrix jacchus	54.12	0.00e+00	1348.00
IUUC-Cfa-020675	Canis familiaris	54.22	0.00e+00	1335.00
IUUC-Cpo-021813	Cavia porcellus	55.11	0.00e+00	1369.00
IUUC-Cre-022969	Chlamydomonas reinhardtii	69.35	0.00e+00	1237.00
IUUC-Csa-023523	Chlorocebus sabaeus	55.19	0.00e+00	1377.00
IUUC-Cho-024704	Choloepus hoffmanni	69.45	1.00e-131	463.00
IUUC-Cin-025572	Ciona intestinalis	51.33	0.00e+00	1257.00
IUUC-Csv-025864	Ciona savignyi	56.90	0.00e+00	977.00
IUUC-Cgl-026510	Colletotrichum gloeosporioides	55.14	0.00e+00	976.00
IUUC-Cne-027053	Cryptococcus neoformans	50.45	0.00e+00	1182.00
IUUC-Cme-027222	Cyanidioschyzon merolae	42.97	3.00e-147	515.00
IUUC-Dre-027421	Danio rerio	54.47	0.00e+00	1345.00
IUUC-Dno-029303	Dasypus novemcinctus	55.11	0.00e+00	1371.00
IUUC-Dor-030290	Dipodomys ordii	53.17	1.00e-166	579.00
IUUC-Dse-031543	Dothistroma septosporum	45.80	0.00e+00	1048.00
IUUC-Dme-031945	Drosophila melanogaster	60.46	0.00e+00	1021.00
IUUC-Ete-032873	Echinops telfairi	52.89	0.00e+00	1204.00
IUUC-Eca-033773	Equus caballus	54.20	0.00e+00	1331.00
IUUC-Eeu-034874	Erinaceus europaeus	42.40	0.00e+00	666.00
IUUC-Fca-035739	Felis catus	54.35	0.00e+00	1332.00
IUUC-Fal-037263	Ficedula albicollis	51.42	0.00e+00	1203.00
IUUC-Fox-037738	Fusarium oxysporum	46.92	0.00e+00	1119.00
IUUC-Fso-038153	Fusarium solani	46.67	0.00e+00	1113.00
IUUC-Gmo-039602	Gadus morhua	50.68	0.00e+00	1227.00
IUUC-Ggr-039931	Gaeumannomyces graminis	53.99	0.00e+00	961.00
IUUC-Gga-040590	Gallus gallus	54.90	0.00e+00	1362.00
IUUC-Gac-041318	Gasterosteus aculeatus	54.40	0.00e+00	1339.00
IUUC-Gma-043894	Glycine max	77.21	0.00e+00	1967.00
IUUC-Ggo-045029	Gorilla gorilla	54.79	0.00e+00	1368.00
IUUC-Hsa-046078	Homo sapiens	54.71	0.00e+00	1367.00
IUUC-Hvu-047556	Hordeum vulgare	89.74	0.00e+00	2288.00
IUUC-Itr-048881	Ictidomys tridecemlineatus	46.42	0.00e+00	761.00
IUUC-Kpa-049256	Komagataella pastoris	45.31	0.00e+00	1058.00
IUUC-Lch-049706	Latimeria chalumnae	54.76	0.00e+00	1352.00
IUUC-Lpe-051316	Leersia perrieri	94.25	0.00e+00	2279.00
IUUC-Loc-051867	Lepisosteus oculatus	50.12	0.00e+00	817.00
IUUC-Lma-053138	Leptosphaeria maculans	55.16	0.00e+00	997.00
IUUC-Laf-053510	Loxodonta africana	55.31	0.00e+00	1379.00
IUUC-Mcc-055836	Macaca mulatta	54.80	0.00e+00	1363.00
IUUC-Meu-056238	Macropus eugenii	56.80	0.00e+00	777.00
IUUC-Mor-057172	Magnaporthe oryzae	46.12	0.00e+00	1093.00
IUUC-Mpo-057300	Magnaporthe poae	46.37	0.00e+00	1092.00
IUUC-Mtr-058248	Medicago truncatula	77.46	0.00e+00	1972.00
IUUC-Mla-059019	Melampsora laricipopulina	50.00	0.00e+00	1209.00
IUUC-Mga-059499	Meleagris gallopavo	54.89	0.00e+00	1359.00
IUUC-Mvi-060336	Microbotryum violaceum	50.56	0.00e+00	1207.00
IUUC-Mmr-061102	Microcebus murinus	54.78	0.00e+00	1357.00
IUUC-Mdo-062594	Monodelphis domestica	55.46	0.00e+00	1397.00
IUUC-Mmu-063736	Mus musculus	54.91	0.00e+00	1360.00
IUUC-Mac-065398	Musa acuminata	77.65	0.00e+00	1939.00
IUUC-Mpu-066701	Mustela putorius furo	54.95	0.00e+00	1363.00
IUUC-Mlu-067392	Myotis lucifugus	55.10	0.00e+00	1355.00
IUUC-Nfi-068270	Neosartorya fischeri	54.82	0.00e+00	964.00
IUUC-Ncr-068892	Neurospora crassa	46.99	0.00e+00	1098.00
IUUC-Nle-069634	Nomascus leucogenys	65.87	0.00e+00	951.00
IUUC-Opr-070952	Ochotona princeps	42.37	0.00e+00	659.00
IUUC-Ont-072488	Oreochromis niloticus	53.91	0.00e+00	1328.00
IUUC-Ocu-074211	Oryctolagus cuniculus	55.03	0.00e+00	1366.00
IUUC-Oba-075761	Oryza barthii	93.75	0.00e+00	2280.00
IUUC-Obr-076429	Oryza brachyantha	92.45	0.00e+00	2268.00
IUUC-Ogl-077364	Oryza glaberrima	93.76	0.00e+00	2284.00
IUUC-Ogu-078257	Oryza glumaepatula	93.28	0.00e+00	2218.00
IUUC-Oin-079274	Oryza indica	93.60	0.00e+00	2281.00
IUUC-Olo-080466	Oryza longistaminata	96.45	0.00e+00	1669.00
IUUC-Ome-081668	Oryza meridionalis	90.08	0.00e+00	1423.00
IUUC-Oni-082874	Oryza nivara	93.68	0.00e+00	2280.00
IUUC-Opu-083885	Oryza punctata	94.01	0.00e+00	2295.00
IUUC-Oru-084274	Oryza rufipogon	93.68	0.00e+00	2281.00
IUUC-Osa-085565	Oryza sativa	93.68	0.00e+00	2281.00
IUUC-Ola-086921	Oryzias latipes	53.60	0.00e+00	1323.00
IUUC-Olu-087639	Ostreococcus lucimarinus	60.70	0.00e+00	1536.00
IUUC-Oga-087991	Otolemur garnettii	52.37	0.00e+00	1276.00
IUUC-Oar-089590	Ovis aries	55.03	0.00e+00	1371.00
IUUC-Ptr-090808	Pan troglodytes	54.79	0.00e+00	1368.00
IUUC-Pan-092475	Papio anubis	54.98	0.00e+00	1369.00
IUUC-Psi-093044	Pelodiscus sinensis	54.33	0.00e+00	889.00
IUUC-Pno-094839	Phaeosphaeria nodorum	45.33	0.00e+00	1043.00
IUUC-Ppa-095785	Physcomitrella patens	69.05	0.00e+00	1781.00
IUUC-Pfo-097493	Poecilia formosa	54.29	0.00e+00	1328.00
IUUC-Pab-098497	Pongo abelii	55.11	0.00e+00	1377.00
IUUC-Pop-100086	Populus trichocarpa	81.16	0.00e+00	2017.00
IUUC-Pca-100413	Procavia capensis	60.43	0.00e+00	696.00
IUUC-Ppe-101392	Prunus persica	81.13	0.00e+00	2050.00
IUUC-Pva-102126	Pteropus vampyrus	52.48	0.00e+00	1290.00
IUUC-Pgr-103376	Puccinia graminis	49.56	0.00e+00	1220.00
IUUC-Ptt-103978	Puccinia triticina	44.53	0.00e+00	978.00
IUUC-Pte-104126	Pyrenophora teres	45.63	0.00e+00	1052.00
IUUC-Pyt-104778	Pyrenophora triticirepentis	38.97	0.00e+00	720.00
IUUC-Rno-105428	Rattus norvegicus	55.23	0.00e+00	1367.00
IUUC-Sce-106464	Saccharomyces cerevisiae	41.97	0.00e+00	941.00
IUUC-Sha-107301	Sarcophilus harrisii	54.58	0.00e+00	1358.00
IUUC-Sja-107961	Schizosaccharomyces japonicus	44.60	0.00e+00	1062.00
IUUC-Spo-108217	Schizosaccharomyces pombe	44.37	0.00e+00	1056.00
IUUC-Ssl-108643	Sclerotinia sclerotiorum	47.09	0.00e+00	1123.00
IUUC-Smo-108986	Selaginella moellendorffii	65.68	0.00e+00	1699.00
IUUC-Sit-109697	Setaria italica	97.54	0.00e+00	2365.00
IUUC-Sly-111759	Solanum lycopersicum	79.51	0.00e+00	2016.00
IUUC-Stu-112564	Solanum tuberosum	79.67	0.00e+00	2016.00
IUUC-Sar-113313	Sorex araneus	42.44	0.00e+00	642.00
IUUC-Sre-115209	Sporisorium reilianum	54.83	0.00e+00	996.00
IUUC-Ssc-115933	Sus scrofa	55.03	0.00e+00	1369.00
IUUC-Tgu-117109	Taeniopygia guttata	50.51	4.00e-103	367.00
IUUC-Tru-117772	Takifugu rubripes	54.28	0.00e+00	1310.00
IUUC-Tsy-119105	Tarsius syrichta	51.98	0.00e+00	1028.00
IUUC-Tca-121545	Theobroma cacao	78.36	0.00e+00	2011.00
IUUC-Tre-121951	Trichoderma reesei	53.91	0.00e+00	968.00
IUUC-Tvi-122359	Trichoderma virens	47.09	0.00e+00	1111.00
IUUC-Tae-125527	Triticum aestivum	92.61	0.00e+00	2269.00
IUUC-Tur-126754	Triticum urartu	91.22	0.00e+00	2224.00
IUUC-Tme-127170	Tuber melanosporum	48.05	0.00e+00	1176.00
IUUC-Tbe-127882	Tupaia belangeri	68.71	1.00e-128	453.00
IUUC-Ttr-128217	Tursiops truncatus	52.80	0.00e+00	1295.00
IUUC-Uma-129337	Ustilago maydis	54.71	0.00e+00	993.00
IUUC-Vda-129828	Verticillium dahliae	46.73	0.00e+00	1101.00
IUUC-Vpa-130537	Vicugna pacos	54.41	0.00e+00	1344.00
IUUC-Vvi-130958	Vitis vinifera	80.15	0.00e+00	2013.00
IUUC-Xtr-132857	Xenopus tropicalis	52.77	0.00e+00	1281.00
IUUC-Xma-133138	Xiphophorus maculatus	54.21	0.00e+00	1328.00
IUUC-Yli-134399	Yarrowia lipolytica	49.13	0.00e+00	835.00
IUUC-Zma-135612	Zea mays	93.67	0.00e+00	2363.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence