iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Tca-121758

Ensembl Protein ID

EOY30915

UniProt Accession

A0A061GM07; A0A061GM07_THECC

Genbank Protein ID

EOY30915.1

Protein Name

LisH dimerization motif,WD40/YVTN repeat-like-containing domain isoform 1

Genbank Nucleotide ID

CM001887

Gene Name

TCM_037959

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
TCM_037959	EOY30915	EOY30915
TCM_037959	EOY30916	EOY30916
TCM_037959	EOY30917	EOY30917

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	7.00e-25	87.0	624	653
UBD/Beta-Prp	1.50e-47	163.2	576	710

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf.sd.tllvsGsdDgtikvWD 29
           H+ ++t+++f ++  +l+++s D+t+++WD
   Q: 624  HSQWITDVRFsPSmSRLATSSADKTVRIWD 653
           9**********66799************** PP

UBD/Beta-Prp

   S: 45   lrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfspsgdklvsGshdrtirvwdlet.gqcleetlsghdgvvncvv 144
           +r++   +++v ++ fs dgk+l+tg+ D+ + +w  +++   +tl++h++ +++++fsps ++l++ s+d+t+r+wd ++ g+ l+ t+ gh+ +v+++ 
   Q: 576  VRRIPASTSKVECCHFSADGKLLATGGHDKKAVLWCTESFAVKSTLEEHSQWITDVRFSPSMSRLATSSADKTVRIWDADNpGYSLR-TFVGHSTTVTSLD 675
           334444444466666666666666666666666666666666666666666666666666666666666666666666655344444.6666666666666 PP
   S: 145  vhpdg.nllvsGslDrtvrlWdlktgkllrtltgg 178
           +hp++ +l+ s+ +++ +r W++k+g++   ++gg
   Q: 676  FHPTKeDLICSCDNNSEIRYWSIKNGSCAGVFKGG 710
           66666666666666666666666666666665554 PP

Organism

Theobroma cacao

Protein Sequence
(Fasta)

MSQTNWEADK MLDVYIYDYM IKRKMHATAK ALQAEGKVST DPVAIDVPGG FLFEWWSVFW 60
DIFIARTNEK HSEAAASYIE SQMVKARELQ QPQHHQKPQQ MQMQQLLLQR HAQQQQQQQQ 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TTTAATAGAA GTGGGAGTAA ATGAAGTGTA TCTGTCATCA GCTTTCTCAT AAAAGCTGAC 60
TATAAAGAGG GCTTCAAAGG CAAAACCGAA ATTTTATGCG AGAAAAAAGA AAGCTGGTTG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR006594--LisH
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS50896--LISH
PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08513--LisH
PF00400--WD40

SMART

SM00667--LisH
SM00320--WD40

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Gma-043858	Glycine max	61.65	0.00e+00	764.00
IUUC-Oba-075419	Oryza barthii	52.63	0.00e+00	718.00
IUUC-Ogl-077064	Oryza glaberrima	54.57	0.00e+00	781.00
IUUC-Ogu-078816	Oryza glumaepatula	52.40	0.00e+00	697.00
IUUC-Oin-079222	Oryza indica	52.05	0.00e+00	701.00
IUUC-Oni-082753	Oryza nivara	52.28	0.00e+00	701.00
IUUC-Oru-084538	Oryza rufipogon	52.05	0.00e+00	698.00
IUUC-Osa-086142	Oryza sativa	54.79	0.00e+00	784.00
IUUC-Ppe-101868	Prunus persica	74.18	0.00e+00	954.00
IUUC-Tae-125267	Triticum aestivum	55.26	0.00e+00	795.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence