iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Mtr-058068

Ensembl Protein ID

KEH26579

UniProt Accession

A0A072U9U5; A0A072U9U5_MEDTR

Genbank Protein ID

KEH26579.1

Protein Name

Zinc finger CCCH domain protein

Genbank Nucleotide ID

CM001222

Gene Name

MTR_6g465150

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
MTR_6g465150	KEH26579	KEH26579

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	3.20e-27	94.8	148	185

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvll 36
           gH+  v+++a  s+ + l +Gs D t++vWD  +g ++
   Q: 148  GHKKVVSGIAMpSGsDKLYTGSTDETVRVWDCQSGQCI 185
           899********966799***************999986 PP

Organism

Medicago truncatula

Protein Sequence
(Fasta)

MDFDGGNKRV YNRLGGSNGG DSKNQKVCFQ WQAGKCNRYP CPFLHSELPT SNGNGAPSKR 60
AYADNSSFSG NRRGGSSFNS WGPGRGGGRG RGGGRGGVGG GGGRGVVVNV ERVCTYWIQG 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TTACGCTTTC CCTAACCTTC AAACACAACA CTTCCAAATC TCTCACTTCA AAATCAAAAA 60
GCTTCATCTC AAAAATTAGG GTTTCATTTT TCTTCATTCT TCAATTCAAA CCTAATTAGG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR027295--Quinoprotein_ADH-like_fam
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
IPR000571--Znf_CCCH

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION
PS50103--ZF_C3H1

Pfam

PF00400--WD40
PF00642--zf-CCCH

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40
SM00356--ZnF_C3H1

Gene Ontology

GO:0046872--F:metal ion binding

KEGG

mtr:MTR_6g465150

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000399	Aegilops tauschii	44.91	4.00e-77	280.00
IUUC-Atr-002831	Amborella trichopoda	59.95	2.00e-154	537.00
IUUC-Aly-005699	Arabidopsis lyrata	61.76	8.00e-165	572.00
IUUC-Ath-007223	Arabidopsis thaliana	63.10	7.00e-168	582.00
IUUC-Bdi-014857	Brachypodium distachyon	61.19	1.00e-149	521.00
IUUC-Bol-016382	Brassica oleracea	62.98	1.00e-161	562.00
IUUC-Bra-017351	Brassica rapa	63.80	2.00e-164	571.00
IUUC-Csv-026335	Ciona savignyi	27.67	2.00e-19	89.00
IUUC-Gma-042894	Glycine max	80.96	0.00e+00	662.00
IUUC-Hvu-047824	Hordeum vulgare	57.77	1.00e-113	402.00
IUUC-Lpe-051596	Leersia perrieri	58.18	2.00e-111	395.00
IUUC-Mac-065071	Musa acuminata	65.11	1.00e-165	575.00
IUUC-Oba-075769	Oryza barthii	53.97	8.00e-123	432.00
IUUC-Obr-076011	Oryza brachyantha	60.90	6.00e-153	533.00
IUUC-Ogl-077192	Oryza glaberrima	55.95	3.00e-83	300.00
IUUC-Ogu-078248	Oryza glumaepatula	54.23	7.00e-125	439.00
IUUC-Oin-079981	Oryza indica	61.74	7.00e-152	529.00
IUUC-Olo-080571	Oryza longistaminata	53.24	6.00e-116	410.00
IUUC-Ome-081598	Oryza meridionalis	54.46	4.00e-125	440.00
IUUC-Oni-082711	Oryza nivara	54.46	3.00e-125	441.00
IUUC-Opu-083451	Oryza punctata	58.33	1.00e-147	515.00
IUUC-Oru-085129	Oryza rufipogon	53.97	9.00e-123	432.00
IUUC-Osa-085619	Oryza sativa	58.19	6.00e-107	379.00
IUUC-Ppa-096012	Physcomitrella patens	54.71	2.00e-110	392.00
IUUC-Pop-099244	Populus trichocarpa	66.08	3.00e-169	587.00
IUUC-Ppe-101609	Prunus persica	69.04	0.00e+00	634.00
IUUC-Smo-109306	Selaginella moellendorffii	54.11	7.00e-98	349.00
IUUC-Sit-109731	Setaria italica	59.63	5.00e-145	506.00
IUUC-Sly-111514	Solanum lycopersicum	61.38	3.00e-156	543.00
IUUC-Stu-112646	Solanum tuberosum	61.26	5.00e-161	559.00
IUUC-Sbi-114748	Sorghum bicolor	60.09	5.00e-148	516.00
IUUC-Tca-121658	Theobroma cacao	63.81	4.00e-163	566.00
IUUC-Tae-125489	Triticum aestivum	59.55	1.00e-148	518.00
IUUC-Tur-126095	Triticum urartu	53.90	4.00e-84	305.00
IUUC-Vvi-131444	Vitis vinifera	68.76	2.00e-178	618.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence