iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
fgenesh2_kg.3__1850__AT3G16830.1	fgenesh2_kg.3__1850__AT3G16830.1	fgenesh2_kg.3__1850__AT3G16830.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	3.40e-23	81.4	452	484
UBD/Beta-Prp	3.30e-51	174.9	410	670

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf..sd.tl.lvsGsdDgtikvWDl 30
           H + v++laf  ++  + +v+++dD+ ikvWDl
   Q: 452  HVGCVNDLAFahPNkQMcVVTCGDDKLIKVWDL 484
           9999********776554799***********7 PP

UBD/Beta-Prp

   S: 11   svitcvkfspdksllatgsrdgtikvwdvttgkllrsl..sgheaevtavkfspdgk..ilvtgseDrtikvwdlst 83
             +t v++spd++ll ++++ + i v+ ++  +l + l    h + v+++ f +  k    vt+++D++ikvwdls 
   Q: 410  ISVTRVAWSPDGNLLGVSFTKHLIHVYAYQGSDLRQHLeiDAHVGCVNDLAFAHPNKqmCVVTCGDDKLIKVWDLSG 486
           34566777888888888888888888888888876555446777778888887766667778888888888888875 PP
   S: 84   gkcvhtlkghedsvlslsfsp..sgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGsl. 157
              + t++ghe+ v+s+  ++  + +++ s+  d  i+ w  ++     + +++  ++ +++ ++ dg+ l+s+++ 
   Q: 487  K-KLFTFEGHEAPVYSICPHQkeNIQFIFSTALDGKIKAWLYDNVGSRVDYDAPG-QWCTTMLYSADGSRLFSCGTs 561
           4.45578888888888877776555888888888888887766655555455444.477777777777777777653 PP
   S: 158  ...DrtvrlWdlktgkllrtltgghtdsvyslsfdsngkelvsgsldgtvklwdlqtgecvrtlnght..dnvksvr 229
              D+++  W+ + g l rt  g  ++s   ++fd ++++++++++d++vk+wd+ +++ + t+++     n  ++r
   Q: 562  kegDSFLVEWNESEGALKRTYLGFRKKSPGVVQFDTTRNRFLAVGEDNQVKFWDMDNTNLLTTVEAEGglPNLPRLR 638
           444666777777*********9999***********************************99999988334455789 PP
   S: 230  fspnderlvsgssDgsiriW.dlrsgdllktl 260
           f +++++l+++++D+  +i  +++   +l+++
   Q: 639  FNKDGNLLAVTTADNGFKILaNTDGLRTLRAY 670
           99*************99995455544444444 PP

Organism

Arabidopsis lyrata

Protein Sequence
(Fasta)

MSSLSRELVF LILQFLDEEK FKESVHKLEQ ESGFFFNIKY FEEKALAGEW DEVEKYLSGF 60
TKVDDNRYSM KIFFEIRKQK YLEALDRNDR AKAVEILAKD LKVFATFNEE LYKEITQLLT 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CTTTTCTTCA TTTTCGCTTT GCGACGCGAG GAAATGCAAC CTTGAAACCC TAGAAAACCA 60
TTCCAACTAC GACTAAATCG ATTTCACAAA CTTTGACCTA CCCTTCTTTC ACCATAAACC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR006595--CTLH_C
IPR006594--LisH
IPR011047--Quinoprotein_ADH-like_supfam
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS50897--CTLH
PS50896--LISH
PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00668--CTLH
SM00667--LisH
SM00320--WD40

Gene Ontology

GO:0010072--P:primary shoot apical meristem specification

KEGG

aly:ARALYDRAFT_479149

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ath-006901	Arabidopsis thaliana	97.52	0.00e+00	2205.00
IUUC-Bdi-014677	Brachypodium distachyon	69.63	0.00e+00	1574.00
IUUC-Bol-016487	Brassica oleracea	93.75	0.00e+00	2081.00
IUUC-Bra-016798	Brassica rapa	93.66	0.00e+00	2065.00
IUUC-Gma-042940	Glycine max	71.35	0.00e+00	1635.00
IUUC-Hvu-047370	Hordeum vulgare	69.33	0.00e+00	1585.00
IUUC-Lpe-050951	Leersia perrieri	68.69	0.00e+00	1513.00
IUUC-Mtr-057839	Medicago truncatula	74.80	0.00e+00	1703.00
IUUC-Mac-064999	Musa acuminata	67.17	0.00e+00	1573.00
IUUC-Oba-075415	Oryza barthii	69.98	0.00e+00	1588.00
IUUC-Obr-076726	Oryza brachyantha	70.04	0.00e+00	1607.00
IUUC-Ogl-077810	Oryza glaberrima	69.98	0.00e+00	1588.00
IUUC-Ogu-078090	Oryza glumaepatula	69.98	0.00e+00	1588.00
IUUC-Oin-080158	Oryza indica	69.37	0.00e+00	1583.00
IUUC-Ome-081965	Oryza meridionalis	69.81	0.00e+00	1580.00
IUUC-Oni-082421	Oryza nivara	69.90	0.00e+00	1587.00
IUUC-Opu-083912	Oryza punctata	69.90	0.00e+00	1589.00
IUUC-Oru-085201	Oryza rufipogon	69.98	0.00e+00	1588.00
IUUC-Osa-086161	Oryza sativa	69.98	0.00e+00	1588.00
IUUC-Pop-099268	Populus trichocarpa	72.06	0.00e+00	1606.00
IUUC-Ppe-101491	Prunus persica	76.81	0.00e+00	1785.00
IUUC-Sit-110487	Setaria italica	71.32	0.00e+00	1593.00
IUUC-Sbi-113873	Sorghum bicolor	71.03	0.00e+00	1587.00
IUUC-Tca-121579	Theobroma cacao	75.92	0.00e+00	1691.00
IUUC-Tae-125707	Triticum aestivum	69.27	0.00e+00	1574.00
IUUC-Tur-126477	Triticum urartu	65.54	0.00e+00	1548.00
IUUC-Vvi-131297	Vitis vinifera	73.43	0.00e+00	1672.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence