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Basic Information Integrated Annotations
Tag Content
UUCD2 ID IUUC-Ath-006793
UUCD1 version UUC-ArT-01114
Ensembl Protein ID AT5G14530.1
UniProt Accession Q9LYK6; APRF1_ARATH
Genbank Protein ID CAB87620.1; AED92044.1; ABF85783.1; AAM64344.1
Protein Name Protein ANTHESIS POMOTING FACTOR 1
Genbank Nucleotide ID AL163792; CP002688; BT025881; AY086271
Gene Name APRF1; At5g14530; T15N1.20
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
AT5G14530 AT5G14530.1 AT5G14530.1
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
TRANSFAC
Post-translational Modifications (PTMs)
dbPPT
Protein Expression/Proteomics
GPMDB
Status Unreviewed
Classification
Family E-Value Score Start End
E3 adaptor/Cullin RING/DCX/DWD 1.80e-18 66.8 112 145
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DWD
   S: 1    gHtdsvtclaf...sdtllvsGsdDgtikvWDlrt 32
           gH+d+v +l+    + + + sGs D ++++WDlr 
   Q: 112  GHKDRVVSLCMspiN-DSFMSGSLDRSVRLWDLRV 145
           8*********98765.789*************985 PP
   
Organism Arabidopsis thaliana
Functional Description
(View)

Functional Description


     Component of a chromatin regulatory complex involved in regulating chromatin structure in the nucleus (By similarity). Promotes flowering under long days (LD) via the regulation of bolting (PubMed:27968983).
 Component of a chromatin regulatory complex involved in regulating chromatin structure in the nucleus (By similarity). Promotes flowering under long days (LD) via the regulation of bolting (PubMed:27968983).
Protein Sequence
(Fasta)
MSLTELDDGL VRRMAMGAVF SDFGGKIHSV GFHRTDDLLV TSSEDDSLRL FDIANAKQLK 60
ITYHKKHGTD RVCFTHHPSS LICSSRYNLE STGESLRYLS MYDNRILRYF KGHKDRVVSL 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Ath-006793|E3,WD_repeat|Arabidopsis thaliana
Please wait for a moment...
Nucleotide Sequence
(Fasta)
GTTTTTCTTT TGTTATCCCA ATTCTTAAAA CTAAAACGGC TGCGTTTAGT AACCCGCGAA 60
ACCCACTAAA CTCTTTAGTT CTCTCTCTCG TTCCCTTGCC CCTCTCCCTC TCTCGTCCTC 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Ath-006793|E3,WD_repeat|Arabidopsis thaliana
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-0287--Flowering
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat
Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION
Pfam

PF00400--WD40
PRINTS

PR00320--GPROTEINBRPT
SMART

SM00320--WD40
Gene Ontology

GO:0080008--C:Cul4-RING E3 ubiquitin ligase complex
GO:0005634--C:nucleus
GO:0048188--C:Set1C/COMPASS complex
GO:0003682--F:chromatin binding
GO:0009908--P:flower development
GO:0080182--P:histone H3-K4 trimethylation
GO:0016571--P:histone methylation
GO:0048586--P:regulation of long-day photoperiodism, flowering
GO:0048510--P:regulation of timing of transition from vegetative to reproductive phase
KEGG ath:AT5G14530
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-001012 Aegilops tauschii 76.83 1.00e-118 418.00
IUUC-Aml-001221 Ailuropoda melanoleuca 39.42 4.00e-65 240.00
IUUC-Atr-002592 Amborella trichopoda 79.71 2.00e-129 454.00
IUUC-Aca-005383 Anolis carolinensis 39.42 3.00e-64 237.00
IUUC-Aly-005437 Arabidopsis lyrata 99.05 0.00e+00 657.00
IUUC-Ago-007804 Ashbya gossypii 32.89 1.00e-38 152.00
IUUC-Acl-008217 Aspergillus clavatus 32.82 5.00e-42 164.00
IUUC-Afl-008539 Aspergillus flavus 33.14 2.00e-41 162.00
IUUC-Afu-009105 Aspergillus fumigatus 33.13 7.00e-42 163.00
IUUC-Ani-009474 Aspergillus nidulans 32.10 2.00e-39 155.00
IUUC-Ang-009858 Aspergillus niger 33.33 2.00e-41 162.00
IUUC-Aor-009955 Aspergillus oryzae 33.14 2.00e-41 162.00
IUUC-Ate-010364 Aspergillus terreus 32.93 7.00e-42 163.00
IUUC-Ame-010661 Astyanax mexicanus 39.67 8.00e-63 234.00
IUUC-Bgr-012008 Blumeria graminis 31.63 2.00e-40 159.00
IUUC-Bta-013022 Bos taurus 39.34 8.00e-62 231.00
IUUC-Bci-013966 Botrytis cinerea 31.42 2.00e-39 155.00
IUUC-Bdi-015066 Brachypodium distachyon 77.60 6.00e-152 529.00
IUUC-Bol-016019 Brassica oleracea 95.74 0.00e+00 659.00
IUUC-Bra-017871 Brassica rapa 96.85 0.00e+00 642.00
IUUC-Cel-018276 Caenorhabditis elegans 31.13 2.00e-44 172.00
IUUC-Cja-019309 Callithrix jacchus 39.42 4.00e-65 240.00
IUUC-Cfa-020345 Canis familiaris 39.42 4.00e-65 240.00
IUUC-Cpo-022227 Cavia porcellus 35.78 4.00e-52 197.00
IUUC-Csa-023267 Chlorocebus sabaeus 38.78 3.00e-67 248.00
IUUC-Cin-025628 Ciona intestinalis 40.88 9.00e-69 253.00
IUUC-Csv-026164 Ciona savignyi 41.01 3.00e-71 261.00
IUUC-Cgl-026516 Colletotrichum gloeosporioides 29.70 6.00e-35 140.00
IUUC-Cne-026890 Cryptococcus neoformans 33.81 2.00e-28 119.00
IUUC-Dre-028001 Danio rerio 40.06 2.00e-66 245.00
IUUC-Dno-029704 Dasypus novemcinctus 40.19 3.00e-66 244.00
IUUC-Dor-031078 Dipodomys ordii 42.79 4.00e-47 180.00
IUUC-Dse-031152 Dothistroma septosporum 32.93 3.00e-40 158.00
IUUC-Dme-032085 Drosophila melanogaster 39.24 1.00e-69 256.00
IUUC-Ete-033158 Echinops telfairi 39.49 1.00e-65 242.00
IUUC-Eca-033879 Equus caballus 41.60 3.00e-57 215.00
IUUC-Fca-035896 Felis catus 39.42 4.00e-65 240.00
IUUC-Fox-037858 Fusarium oxysporum 32.52 5.00e-42 164.00
IUUC-Fso-038386 Fusarium solani 31.69 3.00e-35 141.00
IUUC-Gmo-038506 Gadus morhua 40.85 7.00e-63 234.00
IUUC-Ggr-040090 Gaeumannomyces graminis 31.06 7.00e-40 157.00
IUUC-Gga-040192 Gallus gallus 39.42 4.00e-65 240.00
IUUC-Gac-042494 Gasterosteus aculeatus 40.39 2.00e-61 229.00
IUUC-Gma-044074 Glycine max 85.35 1.00e-163 568.00
IUUC-Ggo-044584 Gorilla gorilla 38.46 3.00e-66 244.00
IUUC-Hsa-045866 Homo sapiens 39.42 4.00e-65 240.00
IUUC-Hvu-047731 Hordeum vulgare 79.69 1.00e-125 441.00
IUUC-Itr-048338 Ictidomys tridecemlineatus 39.42 4.00e-65 240.00
IUUC-Kpa-049249 Komagataella pastoris 33.99 3.00e-44 171.00
IUUC-Lpe-050830 Leersia perrieri 76.90 2.00e-148 517.00
IUUC-Lma-053026 Leptosphaeria maculans 31.90 3.00e-40 158.00
IUUC-Mcc-055583 Macaca mulatta 39.42 4.00e-65 240.00
IUUC-Meu-056113 Macropus eugenii 32.37 2.00e-43 168.00
IUUC-Mor-057267 Magnaporthe oryzae 31.88 3.00e-36 145.00
IUUC-Mpo-057502 Magnaporthe poae 31.03 9.00e-41 160.00
IUUC-Mtr-058200 Medicago truncatula 83.12 4.00e-160 556.00
IUUC-Mla-058815 Melampsora laricipopulina 35.63 2.00e-51 195.00
IUUC-Mga-059407 Meleagris gallopavo 41.63 2.00e-60 224.00
IUUC-Mvi-060411 Microbotryum violaceum 35.91 7.00e-51 193.00
IUUC-Mmr-061470 Microcebus murinus 39.42 4.00e-65 240.00
IUUC-Mdo-062860 Monodelphis domestica 39.42 1.00e-64 239.00
IUUC-Mmu-063105 Mus musculus 39.42 4.00e-65 240.00
IUUC-Mac-065314 Musa acuminata 78.06 6.00e-156 542.00
IUUC-Mpu-066472 Mustela putorius furo 41.63 2.00e-60 224.00
IUUC-Mlu-067073 Myotis lucifugus 39.35 1.00e-64 239.00
IUUC-Nfi-068284 Neosartorya fischeri 32.93 5.00e-42 164.00
IUUC-Ncr-068702 Neurospora crassa 29.78 9.00e-32 130.00
IUUC-Nle-069451 Nomascus leucogenys 39.42 4.00e-65 240.00
IUUC-Opr-071112 Ochotona princeps 41.63 2.00e-60 224.00
IUUC-Ont-071988 Oreochromis niloticus 40.66 5.00e-64 238.00
IUUC-Oan-072947 Ornithorhynchus anatinus 41.25 4.00e-60 223.00
IUUC-Ocu-074969 Oryctolagus cuniculus 39.42 4.00e-65 240.00
IUUC-Oba-075394 Oryza barthii 67.27 6.00e-107 379.00
IUUC-Obr-076456 Oryza brachyantha 76.34 1.00e-148 518.00
IUUC-Ogl-076973 Oryza glaberrima 77.29 7.00e-151 525.00
IUUC-Ogu-078296 Oryza glumaepatula 67.27 6.00e-107 379.00
IUUC-Oin-079656 Oryza indica 77.29 7.00e-151 525.00
IUUC-Olo-080893 Oryza longistaminata 66.25 3.00e-122 430.00
IUUC-Ome-081559 Oryza meridionalis 72.67 8.00e-67 245.00
IUUC-Oni-083104 Oryza nivara 67.27 6.00e-107 379.00
IUUC-Opu-084098 Oryza punctata 63.09 1.00e-112 398.00
IUUC-Oru-084364 Oryza rufipogon 67.27 3.00e-107 380.00
IUUC-Osa-086296 Oryza sativa 77.29 7.00e-151 525.00
IUUC-Ola-087095 Oryzias latipes 40.71 9.00e-67 246.00
IUUC-Olu-087603 Ostreococcus lucimarinus 34.93 6.00e-52 197.00
IUUC-Oga-088766 Otolemur garnettii 39.42 4.00e-65 240.00
IUUC-Oar-089565 Ovis aries 38.59 1.00e-62 232.00
IUUC-Ptr-091219 Pan troglodytes 38.14 9.00e-66 243.00
IUUC-Pan-091733 Papio anubis 39.42 4.00e-65 240.00
IUUC-Pma-094332 Petromyzon marinus 38.46 2.00e-68 251.00
IUUC-Pno-094960 Phaeosphaeria nodorum 31.79 3.00e-41 161.00
IUUC-Ppa-095292 Physcomitrella patens 65.27 9.00e-124 435.00
IUUC-Pfo-096775 Poecilia formosa 40.66 8.00e-64 237.00
IUUC-Pab-098340 Pongo abelii 38.14 1.00e-66 246.00
IUUC-Pop-098907 Populus trichocarpa 80.85 2.00e-160 557.00
IUUC-Pca-100635 Procavia capensis 40.86 2.00e-59 221.00
IUUC-Ppe-101452 Prunus persica 79.75 4.00e-156 543.00
IUUC-Pva-102798 Pteropus vampyrus 39.42 6.00e-65 240.00
IUUC-Pgr-103395 Puccinia graminis 36.65 2.00e-55 208.00
IUUC-Ptt-103747 Puccinia triticina 37.64 1.00e-54 206.00
IUUC-Pte-104129 Pyrenophora teres 34.27 1.00e-39 157.00
IUUC-Pyt-104773 Pyrenophora triticirepentis 31.44 2.00e-41 162.00
IUUC-Rno-106127 Rattus norvegicus 38.66 3.00e-61 227.00
IUUC-Sce-106257 Saccharomyces cerevisiae 32.46 1.00e-38 153.00
IUUC-Sha-107529 Sarcophilus harrisii 37.58 2.00e-61 228.00
IUUC-Sja-107724 Schizosaccharomyces japonicus 31.91 3.00e-40 158.00
IUUC-Spo-108128 Schizosaccharomyces pombe 30.59 1.00e-38 152.00
IUUC-Smo-109591 Selaginella moellendorffii 63.67 3.00e-120 423.00
IUUC-Sit-109858 Setaria italica 77.64 4.00e-149 520.00
IUUC-Sly-111267 Solanum lycopersicum 74.55 1.00e-149 521.00
IUUC-Sar-113079 Sorex araneus 41.63 2.00e-60 224.00
IUUC-Sbi-114232 Sorghum bicolor 80.26 2.00e-112 397.00
IUUC-Sre-115157 Sporisorium reilianum 30.61 4.00e-38 151.00
IUUC-Ssc-116386 Sus scrofa 39.42 4.00e-65 240.00
IUUC-Tgu-116465 Taeniopygia guttata 40.61 3.00e-56 212.00
IUUC-Tru-117604 Takifugu rubripes 41.31 3.00e-65 242.00
IUUC-Tni-120237 Tetraodon nigroviridis 40.98 6.00e-65 241.00
IUUC-Tca-121853 Theobroma cacao 80.55 2.00e-161 561.00
IUUC-Tre-122205 Trichoderma reesei 30.91 2.00e-39 155.00
IUUC-Tvi-122471 Trichoderma virens 27.58 2.00e-28 119.00
IUUC-Tae-125200 Triticum aestivum 77.60 5.00e-152 529.00
IUUC-Tme-126883 Tuber melanosporum 32.73 8.00e-45 173.00
IUUC-Ttr-128307 Tursiops truncatus 41.63 2.00e-60 224.00
IUUC-Uma-129579 Ustilago maydis 32.47 2.00e-43 168.00
IUUC-Vda-129826 Verticillium dahliae 31.90 5.00e-39 154.00
IUUC-Vpa-130091 Vicugna pacos 41.63 2.00e-60 224.00
IUUC-Vvi-131587 Vitis vinifera 81.63 2.00e-162 563.00
IUUC-Xma-133496 Xiphophorus maculatus 40.71 4.00e-67 247.00
IUUC-Yli-134509 Yarrowia lipolytica 31.33 2.00e-40 159.00
IUUC-Zma-134685 Zea mays 77.32 2.00e-149 520.00
Created Date 25-Jun-2017

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