iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

iUUCD ID

IUUC-Ath-007699

Ensembl Protein ID

AT3G19040.2

UniProt Accession

Q6PUA2; Q9LJ62; TAF1B_ARATH

Genbank Protein ID

AAS90944.1; BAB01700.1; AEE76187.1

Protein Name

Transcription initiation factor TFIID subunit 1b; TAFII250-B; TBP-associated factor 1b; Transcription initiation factor TFIID subunit 1-B

Genbank Nucleotide ID

AY579213; AP000735; CP002686

Gene Name

TAF1B; HAF2; At3g19040; K13E13.15; K13E13_16

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT3G19040	AT3G19040.1	AT3G19040.1
AT3G19040	AT3G19040.2	AT3G19040.2

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
DNA & RNA Element
TRANSFAC
Protein Expression/Proteomics

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
ULD/UDP/UBQ/UBQ_Other	9.60e-09	35.9	580	653

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

ULD/UDP/UBQ/UBQ_Other

   S: 1    vqvtvksldgseltlkvnpsdtVaeLKekiekklgip.peqqrLiykGkiLeddktLadyglkdgstihllekk 73
           ++++vksl g+   l v + ++V+ LK k ++kl +   e +++ y Gk+Led k+La+ +++++s +hll++k
   Q: 580  MTIVVKSLGGKGSLLTVGREESVSSLKAKASRKLDFKeTEAVKMFYMGKELEDEKSLAEQNVQPNSLVHLLRTK 653
           6899*******667788********************999*******************************997 PP

Organism

Arabidopsis thaliana

Functional Description
(View)

TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription. Core scaffold of the TFIID complex. Acts as a histone acetyltransferase involved in the light regulation of growth and gene expression. Required for H3K9, H3K27, and H4K12 acetylation on the target promoters.

Protein Sequence
(Fasta)

MSESNDNETS ADYGSNDEEY DGPELQVVTE EDHLLPKREY LSAAFALSGL NSRASVFDDE 60
DYDEQGGQEK EHVPVEKSFD SEEREPVVLK EEKPVKHEKE ASILGNKNQM DTGDVQEELV 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GTTCCTTTGC TATTTGGGAA GCAAAATTGT CACGCCACTC TTTGCATTCG AGGGTTTTAT 60
TATGTCTGAG TCCAACGACA ACGAGACTTC CGCAGGTTAT ATTTGCAGTT TCTTACATGG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0010--Activator
KW-0103--Bromodomain
KW-0156--Chromatin regulator
KW-0175--Coiled coil
KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0804--Transcription
KW-0805--Transcription regulation

Interpro

IPR001487--Bromodomain
IPR018359--Bromodomain_CS
IPR022591--TFIID_sub1_DUF3591
IPR029071--Ubiquitin-rel_dom
IPR000626--Ubiquitin_dom

PROSITE

PS00633--BROMODOMAIN_1
PS50014--BROMODOMAIN_2
PS50053--UBIQUITIN_2

Pfam

PF00439--Bromodomain
PF12157--DUF3591
PF00240--ubiquitin

PRINTS

PR00503--BROMODOMAIN

SMART

SM00297--BROMO
SM00213--UBQ

Gene Ontology

GO:0016020--C:membrane
GO:0005669--C:transcription factor TFIID complex
GO:0004402--F:histone acetyltransferase activity
GO:0001129--F:RNA polymerase II transcription factor activity, TBP-class protein binding, involved in preinitiation complex assembly
GO:0043565--F:sequence-specific DNA binding
GO:0017025--F:TBP-class protein binding
GO:0003712--F:transcription cofactor activity
GO:0016573--P:histone acetylation
GO:0045944--P:positive regulation of transcription from RNA polymerase II promoter
GO:0009416--P:response to light stimulus

KEGG

ath:AT3G19040

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aly-006419	Arabidopsis lyrata	86.47	0.00e+00	2966.00
IUUC-Oba-075663	Oryza barthii	41.08	0.00e+00	991.00
IUUC-Ogl-077575	Oryza glaberrima	40.13	0.00e+00	1016.00
IUUC-Ogu-079017	Oryza glumaepatula	39.81	0.00e+00	989.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence