iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Cre-022926

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

WD40 repeat protein

Genbank Nucleotide ID

DS496110

Gene Name

CHLREDRAFT_98108

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
CHLREDRAFT_98108	EDP08348	EDP08348

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.20e-12	47.1	285	318

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 4    dsvtclaf.sd.tllvsGsdDgtikvWDlrtgvl 35
           + v++laf +d   l+s +dDg ++vWDlrt ++
   Q: 285  GNVRALAFtHDgSELLSTGDDGAVHVWDLRTRRC 318
           679*****9777889999************9887 PP

Organism

Chlamydomonas reinhardtii

Protein Sequence
(Fasta)

MLTGRVAVWA DPDDATLSVD VAKVNRLRKL RKDDKQTTMD GAEYEAALRK QHQALNPRTS 60
WATRKAKQQE QKKRRGEDSE EDEEDAEEAE VAAEAEALLA RAGGLTERRA GGASRRLPAG 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGCTTACAG GCCGTGTGGC TGTGTGGGCT GACCCGGACG ACGCCACCCT CAGTGTGGAC 60
GTGGCCAAGG TGAACCGCCT GCGCAAGCTG CGCAAGGACG ACAAGCAGAC CACCATGGAC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0034388--C:Pwp2p-containing subcomplex of 90S preribosome
GO:0032040--C:small-subunit processome
GO:0000462--P:maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

KEGG

cre:CHLREDRAFT_98108

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000184	Aegilops tauschii	40.13	1.00e-89	321.00
IUUC-Aml-002252	Ailuropoda melanoleuca	33.51	8.00e-60	223.00
IUUC-Atr-002575	Amborella trichopoda	37.82	4.00e-86	310.00
IUUC-Apl-003632	Anas platyrhynchos	35.06	2.00e-07	48.50
IUUC-Aly-006512	Arabidopsis lyrata	38.20	2.00e-89	321.00
IUUC-Ath-007244	Arabidopsis thaliana	38.84	7.00e-91	326.00
IUUC-Ago-007895	Ashbya gossypii	28.99	1.00e-43	169.00
IUUC-Acl-008343	Aspergillus clavatus	33.54	2.00e-50	192.00
IUUC-Afl-008445	Aspergillus flavus	33.33	1.00e-52	199.00
IUUC-Aor-009986	Aspergillus oryzae	33.54	9.00e-52	196.00
IUUC-Ame-011338	Astyanax mexicanus	37.95	2.00e-68	251.00
IUUC-Bgr-012201	Blumeria graminis	28.45	1.00e-47	182.00
IUUC-Bta-013058	Bos taurus	32.71	1.00e-61	229.00
IUUC-Bci-013619	Botrytis cinerea	29.75	6.00e-47	180.00
IUUC-Bdi-014771	Brachypodium distachyon	38.89	3.00e-87	313.00
IUUC-Bol-015230	Brassica oleracea	39.20	1.00e-83	301.00
IUUC-Bra-017041	Brassica rapa	38.31	2.00e-80	291.00
IUUC-Cel-018293	Caenorhabditis elegans	23.32	1.00e-28	118.00
IUUC-Cja-019503	Callithrix jacchus	33.51	2.00e-62	231.00
IUUC-Cfa-020743	Canis familiaris	33.89	2.00e-61	228.00
IUUC-Cpo-021488	Cavia porcellus	34.58	4.00e-62	230.00
IUUC-Csa-023110	Chlorocebus sabaeus	33.51	1.00e-61	229.00
IUUC-Cin-025208	Ciona intestinalis	27.64	8.00e-44	169.00
IUUC-Cme-027351	Cyanidioschyzon merolae	35.45	1.00e-47	182.00
IUUC-Dre-027524	Danio rerio	32.06	4.00e-50	190.00
IUUC-Dno-029243	Dasypus novemcinctus	33.51	2.00e-62	231.00
IUUC-Dor-030110	Dipodomys ordii	35.48	3.00e-62	231.00
IUUC-Dse-031217	Dothistroma septosporum	31.73	9.00e-41	159.00
IUUC-Dme-031999	Drosophila melanogaster	25.90	2.00e-41	161.00
IUUC-Eca-034350	Equus caballus	31.03	4.00e-61	226.00
IUUC-Eeu-034991	Erinaceus europaeus	33.43	3.00e-59	221.00
IUUC-Fal-036614	Ficedula albicollis	32.70	6.00e-59	219.00
IUUC-Gmo-039183	Gadus morhua	37.01	8.00e-63	232.00
IUUC-Gga-040922	Gallus gallus	31.18	7.00e-65	239.00
IUUC-Gac-041475	Gasterosteus aculeatus	37.50	7.00e-58	216.00
IUUC-Gma-042732	Glycine max	40.81	1.00e-92	332.00
IUUC-Ggo-044517	Gorilla gorilla	33.24	1.00e-61	229.00
IUUC-Hsa-045741	Homo sapiens	33.24	2.00e-61	228.00
IUUC-Hvu-047463	Hordeum vulgare	41.58	4.00e-37	145.00
IUUC-Itr-048128	Ictidomys tridecemlineatus	34.14	3.00e-64	237.00
IUUC-Kpa-049335	Komagataella pastoris	26.82	9.00e-43	166.00
IUUC-Lch-049816	Latimeria chalumnae	33.51	1.00e-58	219.00
IUUC-Lpe-051140	Leersia perrieri	40.21	1.00e-84	305.00
IUUC-Loc-051942	Lepisosteus oculatus	31.11	4.00e-55	207.00
IUUC-Laf-054245	Loxodonta africana	33.78	9.00e-62	229.00
IUUC-Meu-056300	Macropus eugenii	31.09	4.00e-51	193.00
IUUC-Mor-057184	Magnaporthe oryzae	30.27	5.00e-42	164.00
IUUC-Mtr-058019	Medicago truncatula	39.17	5.00e-84	303.00
IUUC-Mga-060179	Meleagris gallopavo	32.36	8.00e-65	239.00
IUUC-Mvi-060435	Microbotryum violaceum	33.06	7.00e-63	233.00
IUUC-Mdo-062187	Monodelphis domestica	33.87	7.00e-59	219.00
IUUC-Mmu-063386	Mus musculus	33.78	1.00e-62	231.00
IUUC-Mpu-066084	Mustela putorius furo	33.33	4.00e-61	227.00
IUUC-Mlu-068130	Myotis lucifugus	33.51	9.00e-61	226.00
IUUC-Nle-069743	Nomascus leucogenys	32.45	3.00e-54	204.00
IUUC-Opr-071111	Ochotona princeps	33.06	1.00e-61	229.00
IUUC-Ont-071979	Oreochromis niloticus	36.01	1.00e-63	235.00
IUUC-Ocu-073754	Oryctolagus cuniculus	31.32	1.00e-64	239.00
IUUC-Oba-075007	Oryza barthii	40.64	2.00e-87	314.00
IUUC-Obr-076447	Oryza brachyantha	40.81	4.00e-89	320.00
IUUC-Ogl-077733	Oryza glaberrima	40.64	1.00e-87	315.00
IUUC-Ogu-078828	Oryza glumaepatula	40.64	1.00e-87	315.00
IUUC-Oin-080152	Oryza indica	40.64	1.00e-87	315.00
IUUC-Olo-080983	Oryza longistaminata	40.00	7.00e-86	309.00
IUUC-Oni-082443	Oryza nivara	40.38	1.00e-87	315.00
IUUC-Opu-083771	Oryza punctata	40.00	4.00e-87	313.00
IUUC-Oru-084272	Oryza rufipogon	40.64	1.00e-87	315.00
IUUC-Osa-085885	Oryza sativa	40.64	8.00e-88	315.00
IUUC-Olu-087644	Ostreococcus lucimarinus	29.55	4.00e-37	147.00
IUUC-Oga-088834	Otolemur garnettii	33.51	1.00e-62	232.00
IUUC-Oar-089712	Ovis aries	32.71	2.00e-61	228.00
IUUC-Pan-092561	Papio anubis	32.98	2.00e-60	225.00
IUUC-Ppa-095397	Physcomitrella patens	45.68	2.00e-96	344.00
IUUC-Pfo-097068	Poecilia formosa	36.78	2.00e-62	231.00
IUUC-Pop-099471	Populus trichocarpa	40.76	3.00e-79	287.00
IUUC-Ppe-101446	Prunus persica	40.04	4.00e-86	310.00
IUUC-Pva-102851	Pteropus vampyrus	31.99	3.00e-55	207.00
IUUC-Pgr-103370	Puccinia graminis	31.55	2.00e-62	231.00
IUUC-Ptt-103838	Puccinia triticina	29.96	4.00e-53	200.00
IUUC-Rno-104910	Rattus norvegicus	33.51	1.00e-60	225.00
IUUC-Sce-106258	Saccharomyces cerevisiae	28.17	6.00e-49	186.00
IUUC-Sja-107746	Schizosaccharomyces japonicus	30.79	5.00e-51	193.00
IUUC-Spo-108268	Schizosaccharomyces pombe	29.61	2.00e-53	202.00
IUUC-Smo-108815	Selaginella moellendorffii	41.88	2.00e-93	334.00
IUUC-Sit-109706	Setaria italica	39.83	2.00e-89	321.00
IUUC-Sly-111533	Solanum lycopersicum	38.25	4.00e-87	313.00
IUUC-Stu-112853	Solanum tuberosum	39.10	2.00e-89	321.00
IUUC-Sbi-114747	Sorghum bicolor	39.92	2.00e-89	321.00
IUUC-Ssc-115916	Sus scrofa	33.51	1.00e-62	232.00
IUUC-Tgu-117291	Taeniopygia guttata	33.15	1.00e-59	222.00
IUUC-Tru-118724	Takifugu rubripes	34.76	2.00e-62	231.00
IUUC-Tsy-118928	Tarsius syrichta	35.90	1.00e-43	169.00
IUUC-Tca-121229	Theobroma cacao	39.79	1.00e-91	328.00
IUUC-Tae-125218	Triticum aestivum	40.09	2.00e-89	321.00
IUUC-Tur-126082	Triticum urartu	34.90	4.00e-55	206.00
IUUC-Ttr-128904	Tursiops truncatus	31.82	8.00e-48	182.00
IUUC-Vpa-130817	Vicugna pacos	33.33	6.00e-63	233.00
IUUC-Vvi-131395	Vitis vinifera	41.28	6.00e-94	336.00
IUUC-Xtr-132971	Xenopus tropicalis	31.56	9.00e-65	239.00
IUUC-Xma-133391	Xiphophorus maculatus	36.59	2.00e-61	228.00
IUUC-Yli-134613	Yarrowia lipolytica	32.55	4.00e-53	200.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence