iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Ssc-115916

Ensembl Protein ID

ENSSSCP00000018647.2

UniProt Accession

F1RSH4; F1RSH4_PIG

Genbank Protein ID

ENSSSCP00000018647

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

FP085452

Gene Name

UTP18

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSSSCG00000017593.2	ENSSSCT00000019154.2	ENSSSCP00000018647.2

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.60e-08	34.8	388	416

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 10   af.sd.tllvsGsdDgtikvWDlrtgvll 36
            f sd + + ++s Dg ++vWD+ + ++l
   Q: 388  TFtSDsKKVYASSADGEVYVWDVNSRKCL 416
           477788999*************9887775 PP

Organism

Sus scrofa

Protein Sequence
(Fasta)

MPPERRGRAR PDRTPGVRPG RKTQVKPGRR AGLGRAGPPR KAAASSQRQP PAPPGAAAAA 60
IAIAAEEERR LRQRNRLRLE EDKPAVEQCL EELVFGDVLD DEDALLRRLR GPRVQVQEDS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CTCCTCTCAG TCTTCCAGCA TGGGACCCTC TGCAGGCTCC GTACTCCACG GGCCGTACCA 60
AGACGAAGGG GTGGAAAAGG CAATTGGGGC TCGTGTAAGT CAAGTGGTTA AAAGTCAGGA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

SMART

SM00320--WD40

Gene Ontology

GO:0031965--C:nuclear membrane
GO:0034388--C:Pwp2p-containing subcomplex of 90S preribosome
GO:0032040--C:small-subunit processome
GO:0003723--F:RNA binding
GO:0000462--P:maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000184	Aegilops tauschii	38.77	2.00e-78	286.00
IUUC-Aml-002252	Ailuropoda melanoleuca	91.79	0.00e+00	852.00
IUUC-Atr-002575	Amborella trichopoda	37.04	1.00e-74	273.00
IUUC-Aly-006512	Arabidopsis lyrata	43.08	9.00e-74	270.00
IUUC-Ath-007244	Arabidopsis thaliana	43.38	1.00e-72	266.00
IUUC-Ago-007895	Ashbya gossypii	25.89	1.00e-33	137.00
IUUC-Acl-008343	Aspergillus clavatus	25.56	5.00e-31	129.00
IUUC-Afl-008445	Aspergillus flavus	25.00	9.00e-39	154.00
IUUC-Aor-009986	Aspergillus oryzae	25.00	3.00e-37	149.00
IUUC-Ame-011338	Astyanax mexicanus	53.35	1.00e-142	499.00
IUUC-Bgr-012201	Blumeria graminis	27.79	4.00e-38	152.00
IUUC-Bta-013058	Bos taurus	90.17	0.00e+00	855.00
IUUC-Bci-013619	Botrytis cinerea	25.06	5.00e-32	132.00
IUUC-Bdi-014771	Brachypodium distachyon	37.88	4.00e-77	281.00
IUUC-Bol-015230	Brassica oleracea	40.30	1.00e-73	270.00
IUUC-Bra-017041	Brassica rapa	39.90	5.00e-72	265.00
IUUC-Cel-018293	Caenorhabditis elegans	28.64	1.00e-50	193.00
IUUC-Cja-019503	Callithrix jacchus	92.42	0.00e+00	813.00
IUUC-Cfa-020743	Canis familiaris	88.65	0.00e+00	858.00
IUUC-Cpo-021488	Cavia porcellus	88.84	0.00e+00	800.00
IUUC-Cre-022926	Chlamydomonas reinhardtii	33.89	6.00e-61	228.00
IUUC-Csa-023110	Chlorocebus sabaeus	85.33	0.00e+00	865.00
IUUC-Cin-025208	Ciona intestinalis	41.19	3.00e-73	268.00
IUUC-Cme-027351	Cyanidioschyzon merolae	27.83	4.00e-43	169.00
IUUC-Dre-027524	Danio rerio	44.86	4.00e-111	394.00
IUUC-Dno-029243	Dasypus novemcinctus	85.59	0.00e+00	862.00
IUUC-Dor-030110	Dipodomys ordii	72.04	0.00e+00	750.00
IUUC-Dse-031217	Dothistroma septosporum	27.57	1.00e-27	117.00
IUUC-Dme-031999	Drosophila melanogaster	34.87	7.00e-57	214.00
IUUC-Eca-034350	Equus caballus	92.42	0.00e+00	861.00
IUUC-Eeu-034991	Erinaceus europaeus	77.42	0.00e+00	782.00
IUUC-Fal-036614	Ficedula albicollis	60.42	8.00e-157	546.00
IUUC-Gmo-039183	Gadus morhua	50.11	7.00e-125	440.00
IUUC-Gga-040922	Gallus gallus	60.95	1.00e-167	582.00
IUUC-Gac-041475	Gasterosteus aculeatus	55.36	3.00e-130	458.00
IUUC-Gma-043598	Glycine max	36.44	1.00e-76	280.00
IUUC-Ggo-044517	Gorilla gorilla	86.33	0.00e+00	868.00
IUUC-Hsa-045741	Homo sapiens	93.25	0.00e+00	866.00
IUUC-Hvu-047463	Hordeum vulgare	38.86	7.00e-32	129.00
IUUC-Itr-048128	Ictidomys tridecemlineatus	88.82	0.00e+00	827.00
IUUC-Kpa-049335	Komagataella pastoris	31.63	5.00e-46	178.00
IUUC-Lch-049816	Latimeria chalumnae	63.96	3.00e-167	581.00
IUUC-Lpe-051140	Leersia perrieri	36.44	1.00e-76	280.00
IUUC-Loc-051942	Lepisosteus oculatus	58.30	8.00e-151	526.00
IUUC-Laf-054245	Loxodonta africana	88.65	0.00e+00	906.00
IUUC-Meu-056300	Macropus eugenii	70.62	5.00e-154	536.00
IUUC-Mor-057184	Magnaporthe oryzae	27.80	2.00e-33	137.00
IUUC-Mtr-058019	Medicago truncatula	38.17	2.00e-69	256.00
IUUC-Mga-060179	Meleagris gallopavo	64.25	3.00e-156	543.00
IUUC-Mvi-060435	Microbotryum violaceum	33.53	2.00e-51	196.00
IUUC-Mdo-062187	Monodelphis domestica	67.08	2.00e-179	622.00
IUUC-Mmu-063386	Mus musculus	78.75	0.00e+00	781.00
IUUC-Mpu-066084	Mustela putorius furo	89.01	0.00e+00	857.00
IUUC-Mlu-068130	Myotis lucifugus	88.65	0.00e+00	878.00
IUUC-Nle-069743	Nomascus leucogenys	86.13	0.00e+00	788.00
IUUC-Opr-071111	Ochotona princeps	90.29	0.00e+00	645.00
IUUC-Ont-071979	Oreochromis niloticus	55.79	1.00e-143	503.00
IUUC-Ocu-073754	Oryctolagus cuniculus	85.34	0.00e+00	813.00
IUUC-Oba-075007	Oryza barthii	37.00	8.00e-75	274.00
IUUC-Obr-076447	Oryza brachyantha	36.88	4.00e-76	278.00
IUUC-Ogl-077733	Oryza glaberrima	37.00	8.00e-75	274.00
IUUC-Ogu-078828	Oryza glumaepatula	37.00	7.00e-75	274.00
IUUC-Oin-080152	Oryza indica	36.77	2.00e-74	273.00
IUUC-Olo-080983	Oryza longistaminata	36.62	1.00e-73	270.00
IUUC-Oni-082443	Oryza nivara	36.53	8.00e-74	271.00
IUUC-Opu-083771	Oryza punctata	37.47	4.00e-75	275.00
IUUC-Oru-084272	Oryza rufipogon	36.77	2.00e-74	273.00
IUUC-Osa-085885	Oryza sativa	36.61	2.00e-75	276.00
IUUC-Olu-087644	Ostreococcus lucimarinus	24.76	2.00e-18	86.30
IUUC-Oga-088834	Otolemur garnettii	86.38	0.00e+00	865.00
IUUC-Oar-089712	Ovis aries	93.15	0.00e+00	797.00
IUUC-Pan-092561	Papio anubis	86.40	0.00e+00	873.00
IUUC-Ppa-095397	Physcomitrella patens	44.27	3.00e-75	275.00
IUUC-Pfo-097068	Poecilia formosa	55.56	1.00e-138	486.00
IUUC-Pop-099471	Populus trichocarpa	37.03	2.00e-65	243.00
IUUC-Ppe-101446	Prunus persica	39.49	8.00e-74	270.00
IUUC-Pva-102851	Pteropus vampyrus	90.53	0.00e+00	839.00
IUUC-Pgr-103370	Puccinia graminis	26.15	4.00e-41	162.00
IUUC-Ptt-103838	Puccinia triticina	27.62	3.00e-39	155.00
IUUC-Rno-104910	Rattus norvegicus	78.96	0.00e+00	758.00
IUUC-Sce-106258	Saccharomyces cerevisiae	28.14	2.00e-39	157.00
IUUC-Sja-107746	Schizosaccharomyces japonicus	26.10	5.00e-43	168.00
IUUC-Spo-108268	Schizosaccharomyces pombe	28.57	9.00e-46	177.00
IUUC-Smo-108806	Selaginella moellendorffii	40.96	7.00e-75	274.00
IUUC-Sit-109706	Setaria italica	37.88	9.00e-77	280.00
IUUC-Sly-111533	Solanum lycopersicum	37.97	2.00e-78	286.00
IUUC-Stu-112853	Solanum tuberosum	38.41	5.00e-81	295.00
IUUC-Sbi-114747	Sorghum bicolor	37.35	3.00e-76	279.00
IUUC-Tgu-117291	Taeniopygia guttata	61.10	2.00e-146	511.00
IUUC-Tru-118724	Takifugu rubripes	50.00	3.00e-129	454.00
IUUC-Tsy-118928	Tarsius syrichta	75.79	0.00e+00	675.00
IUUC-Tca-121229	Theobroma cacao	38.34	6.00e-78	284.00
IUUC-Tae-125218	Triticum aestivum	38.77	2.00e-78	286.00
IUUC-Tur-126082	Triticum urartu	33.33	3.00e-50	192.00
IUUC-Ttr-128904	Tursiops truncatus	82.21	0.00e+00	784.00
IUUC-Vpa-130817	Vicugna pacos	93.67	0.00e+00	872.00
IUUC-Vvi-131395	Vitis vinifera	37.11	2.00e-77	282.00
IUUC-Xtr-132971	Xenopus tropicalis	59.53	6.00e-150	523.00
IUUC-Xma-133391	Xiphophorus maculatus	54.79	2.00e-137	481.00
IUUC-Yli-134613	Yarrowia lipolytica	30.86	4.00e-51	195.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence