iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Ate-010472

Ensembl Protein ID

CADATEAP00005631

UniProt Accession

Q0CLJ4; YTM1_ASPTN

Genbank Protein ID

EAU34509.1

Protein Name

Ribosome biogenesis protein ytm1

Genbank Nucleotide ID

CH476600

Gene Name

ATEG_05440; ytm1

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
CADATEAG00005631	CADATEAT00005631	CADATEAP00005631

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	4.40e-21	73.2	226	260

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tl.lvsGsdDgtikvWDlrt 32
           gHt+ v +la  +  ++ l+sGs+Dgt+++WD+r 
   Q: 226  GHTNAVVSLARdPHsNYgLISGSHDGTCRIWDIRA 260
           8999999998874446689*************875 PP

Organism

Aspergillus terreus

Functional Description
(View)

Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.

Protein Sequence
(Fasta)

MSSQVVATSP AATEGGHTAS IKAAKFVSPN SIVSAGLDRT VRLWKYSESD DGFSGTIAPQ 60
LELYGHKLDI NSLAVHAPSN RILSASSDHM VGFWSTKKSD APAAPENLLP SAASRSSKRR 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGTCATCGC AGGTAGTGGC TACCTCGCCG GCTGCCACTG AAGGAGGACA TACTGCATCC 60
ATCAAGGCCG CCAAATTCGT CTCCCCCAAC TCAATCGTTT CGGCCGGTCT CGATCGCACC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR012972--NLE
IPR023302--Pept_S9A_N
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
IPR028599--WDR12/Ytm1

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08154--NLE
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0005730--C:nucleolus
GO:0005654--C:nucleoplasm
GO:0006364--P:rRNA processing

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Apl-003981	Anas platyrhynchos	31.50	9.00e-30	122.00
IUUC-Ago-007864	Ashbya gossypii	44.62	2.00e-63	234.00
IUUC-Acl-008177	Aspergillus clavatus	86.36	2.00e-159	553.00
IUUC-Afl-008617	Aspergillus flavus	87.88	4.00e-154	535.00
IUUC-Afu-008752	Aspergillus fumigatus	87.27	4.00e-144	502.00
IUUC-Ani-009136	Aspergillus nidulans	85.20	7.00e-151	525.00
IUUC-Ang-009701	Aspergillus niger	86.97	2.00e-150	523.00
IUUC-Aor-009884	Aspergillus oryzae	88.18	5.00e-155	538.00
IUUC-Bgr-012218	Blumeria graminis	59.34	3.00e-105	373.00
IUUC-Bci-013953	Botrytis cinerea	57.53	3.00e-100	356.00
IUUC-Bol-016514	Brassica oleracea	28.06	4.00e-17	80.90
IUUC-Bra-016988	Brassica rapa	28.46	7.00e-18	83.20
IUUC-Cel-018569	Caenorhabditis elegans	24.29	2.00e-13	68.60
IUUC-Cja-019468	Callithrix jacchus	30.74	2.00e-27	115.00
IUUC-Cre-022614	Chlamydomonas reinhardtii	29.74	2.00e-17	81.30
IUUC-Csa-023989	Chlorocebus sabaeus	30.74	2.00e-27	114.00
IUUC-Cho-024426	Choloepus hoffmanni	29.00	6.00e-25	106.00
IUUC-Cgl-026562	Colletotrichum gloeosporioides	51.31	2.00e-34	137.00
IUUC-Cne-027063	Cryptococcus neoformans	26.64	1.00e-14	72.40
IUUC-Dno-029225	Dasypus novemcinctus	30.74	1.00e-27	115.00
IUUC-Dse-031308	Dothistroma septosporum	45.62	3.00e-78	283.00
IUUC-Eeu-035322	Erinaceus europaeus	30.30	1.00e-27	115.00
IUUC-Fox-037965	Fusarium oxysporum	51.66	5.00e-86	309.00
IUUC-Fso-038244	Fusarium solani	53.45	6.00e-88	316.00
IUUC-Ggr-040093	Gaeumannomyces graminis	44.83	1.00e-58	218.00
IUUC-Gma-043756	Glycine max	29.25	8.00e-21	92.80
IUUC-Ggo-045179	Gorilla gorilla	31.17	3.00e-28	117.00
IUUC-Hsa-046114	Homo sapiens	30.74	2.00e-27	114.00
IUUC-Itr-048275	Ictidomys tridecemlineatus	29.44	6.00e-27	113.00
IUUC-Kpa-049304	Komagataella pastoris	46.32	1.00e-70	258.00
IUUC-Lma-053258	Leptosphaeria maculans	54.13	1.00e-93	336.00
IUUC-Mor-057114	Magnaporthe oryzae	49.85	1.00e-80	292.00
IUUC-Mpo-057463	Magnaporthe poae	43.18	2.00e-14	70.10
IUUC-Mla-059107	Melampsora laricipopulina	26.20	5.00e-16	77.00
IUUC-Mga-059745	Meleagris gallopavo	31.50	2.00e-29	121.00
IUUC-Mvi-060362	Microbotryum violaceum	33.64	6.00e-23	100.00
IUUC-Mdo-062257	Monodelphis domestica	30.23	5.00e-30	123.00
IUUC-Mmu-063546	Mus musculus	30.74	1.00e-27	115.00
IUUC-Nfi-068260	Neosartorya fischeri	88.79	5.00e-152	529.00
IUUC-Ncr-068719	Neurospora crassa	55.49	2.00e-81	294.00
IUUC-Ogl-077229	Oryza glaberrima	28.47	6.00e-20	90.10
IUUC-Oin-079683	Oryza indica	28.52	1.00e-19	89.40
IUUC-Ome-081834	Oryza meridionalis	28.46	3.00e-19	88.20
IUUC-Oni-082507	Oryza nivara	28.08	5.00e-19	87.00
IUUC-Oru-085220	Oryza rufipogon	28.08	4.00e-19	87.40
IUUC-Osa-085767	Oryza sativa	28.52	1.00e-19	89.40
IUUC-Ptr-091320	Pan troglodytes	30.74	2.00e-27	114.00
IUUC-Psi-093504	Pelodiscus sinensis	31.10	1.00e-27	115.00
IUUC-Pno-094929	Phaeosphaeria nodorum	52.15	5.00e-89	319.00
IUUC-Pab-097571	Pongo abelii	30.74	3.00e-27	114.00
IUUC-Pgr-103637	Puccinia graminis	26.50	5.00e-20	90.50
IUUC-Ptt-103781	Puccinia triticina	26.78	1.00e-21	95.90
IUUC-Pte-104135	Pyrenophora teres	53.80	2.00e-90	325.00
IUUC-Pyt-104609	Pyrenophora triticirepentis	54.41	5.00e-85	306.00
IUUC-Rno-105114	Rattus norvegicus	29.87	5.00e-27	113.00
IUUC-Sce-106401	Saccharomyces cerevisiae	43.77	1.00e-66	245.00
IUUC-Sja-107766	Schizosaccharomyces japonicus	36.31	6.00e-48	183.00
IUUC-Spo-108134	Schizosaccharomyces pombe	36.79	2.00e-46	177.00
IUUC-Ssl-108398	Sclerotinia sclerotiorum	57.53	8.00e-107	379.00
IUUC-Tca-121605	Theobroma cacao	26.09	2.00e-19	88.60
IUUC-Tre-121947	Trichoderma reesei	51.05	8.00e-85	305.00
IUUC-Tvi-122481	Trichoderma virens	51.05	6.00e-85	306.00
IUUC-Tme-126900	Tuber melanosporum	47.73	1.00e-68	252.00
IUUC-Yli-134531	Yarrowia lipolytica	41.62	8.00e-48	182.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence