iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Pop-099098

Ensembl Protein ID

POPTR_0006s15630.1

UniProt Accession

B9NC39; B9NC39_POPTR

Genbank Protein ID

ERP59479.1

Protein Name

WD-40 repeat protein MSI4

Genbank Nucleotide ID

CM000342

Gene Name

POPTR_0006s15630g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0006s15630	POPTR_0006s15630.1	POPTR_0006s15630.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.40e-25	89.3	328	358

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf..sd.tllvsGsdDgtikvWD 29
           H+++ +c+++  +d +l+++Gs D ++ ++D
   Q: 328  HNADLHCVDWnpHDdNLILTGSADTSVCMFD 358
           999********9445***************9 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MEAAAAAPHV PKKRGRKPKP KEDQQQQQQS AGPKMKEGKK AHQHSVDDKY TQWKSLVPVL 60
YDWLANHNLV WPSLSCRWGP QLEQATYKNR QRLYLSEQAK ILTDGSVPNT LVIANCEVVK 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GTAGACAGGA CACCGACAGA CCCTCCCTCC TCTCAGGGTT TTAGCTCTCA CACTCATACT 60
AGAAGAGAGA AAGAAAGTCG TTTTTTCTTT GAAATGGAAG CTGCTGCTGC TGCTCCTCAT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR022052--Histone-bd_RBBP4_N
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF12265--CAF1C_H4-bd
PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0005634--C:nucleus

KEGG

pop:POPTR_0006s15630g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000914	Aegilops tauschii	74.33	0.00e+00	640.00
IUUC-Atr-003045	Amborella trichopoda	81.65	0.00e+00	754.00
IUUC-Aly-006131	Arabidopsis lyrata	84.78	0.00e+00	825.00
IUUC-Ath-007494	Arabidopsis thaliana	84.93	0.00e+00	825.00
IUUC-Bdi-014938	Brachypodium distachyon	76.33	0.00e+00	716.00
IUUC-Bol-015960	Brassica oleracea	83.37	0.00e+00	819.00
IUUC-Bra-017112	Brassica rapa	83.33	0.00e+00	818.00
IUUC-Lpe-051595	Leersia perrieri	70.17	2.00e-177	615.00
IUUC-Mtr-057993	Medicago truncatula	86.87	0.00e+00	826.00
IUUC-Mac-065523	Musa acuminata	81.80	0.00e+00	640.00
IUUC-Obr-076021	Oryza brachyantha	76.31	0.00e+00	708.00
IUUC-Ogl-077211	Oryza glaberrima	76.10	0.00e+00	701.00
IUUC-Oin-079269	Oryza indica	77.56	0.00e+00	709.00
IUUC-Olo-080631	Oryza longistaminata	67.45	0.00e+00	635.00
IUUC-Opu-083571	Oryza punctata	66.60	4.00e-171	593.00
IUUC-Oru-084902	Oryza rufipogon	71.13	0.00e+00	637.00
IUUC-Osa-085579	Oryza sativa	77.56	0.00e+00	709.00
IUUC-Ppa-095350	Physcomitrella patens	64.32	6.00e-175	606.00
IUUC-Stu-112285	Solanum tuberosum	81.10	2.00e-165	574.00
IUUC-Sbi-114341	Sorghum bicolor	75.80	0.00e+00	701.00
IUUC-Tur-126763	Triticum urartu	73.88	0.00e+00	633.00
IUUC-Vvi-131642	Vitis vinifera	79.87	0.00e+00	729.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence