iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Pop-098889

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Zinc finger family protein

Genbank Nucleotide ID

CM000338

Gene Name

POPTRDRAFT_551914; POPTR_0002s13410g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0002s13410	POPTR_0002s13410.1	POPTR_0002s13410.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/U-box	9.20e-06	26.8	29	84
E3 activity/RING/RING	7.80e-08	33.8	32	73

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 5    eflCpIslelMrdPvvlpsGitydrssIekwl..asggktcPvtrqplteedlvPn 58
            f C I ++l +dP v+ +G+ +   ++ kwl   s+ ++cPv+++ ++ee+lvP 
   Q: 29   NFECNICFDLAQDPIVTLCGHLFCWPCLYKWLhfHSKSRECPVCKALVEEEKLVPL 84
           599*****************************87666669**************96 PP

E3 activity/RING/RING

   S: 1    CaiCledfkdgplvlpCgHvfhadClqkwpglknssskefrCPlCr 46
           C iC++  +d p+v+ CgH+f+  Cl+kw    ++ sk+  CP+C+
   Q: 32   CNICFDLAQD-PIVTLCGHLFCWPCLYKW---LHFHSKSRECPVCK 73
           99********.999***************...6679*********7 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MASGFGESTS RAPHNSSFTS NNGNGDAGNF ECNICFDLAQ DPIVTLCGHL FCWPCLYKWL 60
HFHSKSRECP VCKALVEEEK LVPLYGRGKT STDPRSKSIP GVNIPNRPAG QRPETAPPPE 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ACATTTTGTT TTTATATTTT TATTTGCGTA GTCTCTGGCA TTTCCCATTT TGACTCAATC 60
GATACGCATC TCTATCCAAA AAGGTCAGTA ATTTCTCTCT CTCTTAATCT CTTCCGATCA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0472--Membrane
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0812--Transmembrane
KW-1133--Transmembrane helix
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR018957--Znf_C3HC4_RING-type
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD
IPR017907--Znf_RING_CS

PROSITE

PS00518--ZF_RING_1
PS50089--ZF_RING_2

Pfam

PF00097--zf-C3HC4

SMART

SM00184--RING

Gene Ontology

GO:0036513--C:Derlin-1 retrotranslocation complex
GO:0016021--C:integral component of membrane
GO:1904264--F:ubiquitin protein ligase activity involved in ERAD pathway
GO:0044390--F:ubiquitin-like protein conjugating enzyme binding
GO:0008270--F:zinc ion binding
GO:0071712--P:ER-associated misfolded protein catabolic process
GO:0042787--P:protein ubiquitination involved in ubiquitin-dependent protein catabolic process

KEGG

pop:POPTR_0002s13410g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-002444	Amborella trichopoda	57.45	4.00e-61	226.00
IUUC-Aly-006065	Arabidopsis lyrata	71.43	2.00e-68	251.00
IUUC-Ath-007267	Arabidopsis thaliana	70.37	3.00e-68	250.00
IUUC-Bdi-014183	Brachypodium distachyon	55.45	3.00e-52	197.00
IUUC-Bol-015663	Brassica oleracea	65.70	2.00e-66	244.00
IUUC-Bra-017113	Brassica rapa	66.34	3.00e-71	260.00
IUUC-Cre-022829	Chlamydomonas reinhardtii	54.84	3.00e-26	108.00
IUUC-Dme-031966	Drosophila melanogaster	45.95	2.00e-26	112.00
IUUC-Gma-043172	Glycine max	79.22	8.00e-81	292.00
IUUC-Hvu-047043	Hordeum vulgare	55.77	4.00e-51	193.00
IUUC-Kpa-049392	Komagataella pastoris	47.92	8.00e-09	53.90
IUUC-Lpe-050836	Leersia perrieri	69.59	7.00e-56	211.00
IUUC-Loc-052118	Lepisosteus oculatus	53.62	2.00e-21	94.70
IUUC-Mor-057077	Magnaporthe oryzae	42.37	2.00e-09	56.20
IUUC-Mtr-058130	Medicago truncatula	71.12	4.00e-81	293.00
IUUC-Obr-076736	Oryza brachyantha	55.56	2.00e-56	211.00
IUUC-Ogl-076945	Oryza glaberrima	57.82	4.00e-57	213.00
IUUC-Ogu-078463	Oryza glumaepatula	63.69	1.00e-51	195.00
IUUC-Oin-079606	Oryza indica	57.35	9.00e-57	213.00
IUUC-Olo-080378	Oryza longistaminata	57.82	4.00e-57	213.00
IUUC-Ome-081459	Oryza meridionalis	57.82	1.00e-56	212.00
IUUC-Oni-082738	Oryza nivara	55.92	2.00e-57	215.00
IUUC-Opu-083407	Oryza punctata	56.19	2.00e-57	215.00
IUUC-Oru-084757	Oryza rufipogon	63.69	8.00e-52	196.00
IUUC-Osa-086126	Oryza sativa	57.82	4.00e-57	213.00
IUUC-Ppa-095474	Physcomitrella patens	55.62	3.00e-47	181.00
IUUC-Pfo-096943	Poecilia formosa	58.73	3.00e-21	94.00
IUUC-Smo-109663	Selaginella moellendorffii	52.71	8.00e-34	134.00
IUUC-Sit-109934	Setaria italica	55.98	6.00e-56	209.00
IUUC-Sbi-114116	Sorghum bicolor	56.19	5.00e-54	203.00
IUUC-Tca-121264	Theobroma cacao	86.11	2.00e-77	281.00
IUUC-Tae-124257	Triticum aestivum	55.40	2.00e-51	194.00
IUUC-Tur-126443	Triticum urartu	55.92	1.00e-51	195.00
IUUC-Vvi-131449	Vitis vinifera	83.55	1.00e-91	328.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence