iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Aly-006564

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Zinc finger family protein

Genbank Nucleotide ID

GL348715

Gene Name

ARALYDRAFT_897311

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
scaffold_301281.1	scaffold_301281.1	scaffold_301281.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/RING	1.60e-07	32.4	108	150

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledfkdg..plvlp.CgHvfhadClqkwpglknssskefrCPlCr 46
           C+iCl  f++g   +vlp C H++h +C+ +w       ++e +CPlCr
   Q: 108  CCICLGGFEEGekMKVLPpCSHCYHYECVDRW------LNTESSCPLCR 150
           ********66555666666*************......**********8 PP

Organism

Arabidopsis lyrata

Protein Sequence
(Fasta)

MTSSSPSPQA SMILYWHENQ YDDRNFQIHG RTLFFAMALF SVVIFFALLT LYIHRNCLSR 60
NSLNLHAPSS DQHTRCAGGG LDPATIRSLP VVLCRREAAE EEEEEKECCI CLGGFEEGEK 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AACCGATCGC AAACCGGAAC ATGACGTCAT CTTCACCGTC TCCACAAGCC TCGATGATTT 60
TGTACTGGCA TGAGAACCAA TACGACGACC GCAACTTCCA GATTCATGGC CGGACACTCT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0472--Membrane
KW-1185--Reference proteome
KW-0812--Transmembrane
KW-1133--Transmembrane helix

Interpro

IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

Pfam

PF13639--zf-RING_2

SMART

SM00184--RING

Gene Ontology

GO:0016021--C:integral component of membrane
GO:0008270--F:zinc ion binding

KEGG

aly:ARALYDRAFT_897311

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-002564	Amborella trichopoda	40.99	9.00e-21	92.40
IUUC-Ath-007010	Arabidopsis thaliana	86.79	5.00e-57	212.00
IUUC-Bra-017408	Brassica rapa	75.47	4.00e-52	196.00
IUUC-Gma-043502	Glycine max	43.92	3.00e-29	120.00
IUUC-Mtr-058498	Medicago truncatula	43.56	5.00e-24	102.00
IUUC-Mac-064429	Musa acuminata	37.25	8.00e-19	85.50
IUUC-Oba-075191	Oryza barthii	33.54	6.00e-15	73.20
IUUC-Ogl-077584	Oryza glaberrima	33.54	6.00e-15	73.20
IUUC-Ogu-078773	Oryza glumaepatula	33.54	6.00e-15	73.20
IUUC-Oin-080112	Oryza indica	33.12	2.00e-15	74.70
IUUC-Olo-080647	Oryza longistaminata	35.62	1.00e-13	68.90
IUUC-Ome-081611	Oryza meridionalis	35.86	3.00e-14	70.50
IUUC-Oni-082108	Oryza nivara	33.12	2.00e-15	74.70
IUUC-Opu-083607	Oryza punctata	35.67	5.00e-19	86.70
IUUC-Oru-084593	Oryza rufipogon	33.54	6.00e-15	73.20
IUUC-Osa-086279	Oryza sativa	33.54	6.00e-15	73.20
IUUC-Pop-099417	Populus trichocarpa	42.98	3.00e-22	96.30
IUUC-Ppe-101926	Prunus persica	39.24	2.00e-21	94.40
IUUC-Sit-110425	Setaria italica	33.14	1.00e-20	91.70
IUUC-Sly-110981	Solanum lycopersicum	38.56	1.00e-18	84.70
IUUC-Stu-112860	Solanum tuberosum	41.18	2.00e-21	94.00
IUUC-Sbi-114043	Sorghum bicolor	32.16	2.00e-15	74.70
IUUC-Tca-121482	Theobroma cacao	48.45	3.00e-28	117.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence