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Basic Information Integrated Annotations

Tag Content
iUUCD ID IUUC-Ath-006722
Ensembl Protein ID AT1G24130.1
UniProt Accession O48679; O48679_ARATH
Genbank Protein ID AAC00598.1; AEE30481.1
Protein Name F3I6.5 protein; Transducin/WD40 repeat-like superfamily protein
Genbank Nucleotide ID AC002396; CP002684
Gene Name At1g24130; F3I6.5; F3I6_5
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
AT1G24130 AT1G24130.1 AT1G24130.1
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
Protein Expression/Proteomics
Status Unreviewed
Classification
Family E-Value Score Start End
E3 adaptor/Cullin RING/DCX/DWD 1.10e-28 98.9 191 228
UBD/Beta-Prp 2.20e-43 149.4 67 353
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvllk 37
    H d v++la+ +d ll s+s+D + k+W+++++++l
   Q: 191 HVDAVSSLALsQDgSLLYSASWDRSFKIWRTSDFKCLD 228
    99*********8889********************986 PP
   


   UBD/Beta-Prp

   S: 8    hhksvitcvkfspdksllatgsrdgtikvwdvttgkl........lrslsgheaevtavkfspdgkilvtgseDrtikvwdls............... 82
    +++s+++++++ +++ll tgs ++ i+vw +++ + + +++v+++ + d l+++++D+ i+vw +
   Q: 67 DKSSYVSSLAV--SDKLLYTGSSNSEIRVWPREPPFSpeystgddRNVVANGNGGVKSLVILGD--KLISAHQDHKIRVWKIIdesnrrgqkykcvat 160
    56778888999..9****************9999877888888855555888888*********..6*************888888999**9****** PP
   S: 83 ....................tgkcvhtlkghedsvlslsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrt 160
    + t+ h d v sl++s++g+ l s+s+dr ++w ++ +cl ++++ hd+++n +vv++dg+ + +Gs+D++
   Q: 161 lptmndrfktlfssksyvevRRHKKCTWVHHVDAVSSLALSQDGSLLYSASWDRSFKIWRTSDFKCLDSIEKAHDDAINAIVVSKDGF-VYTGSADKK 257
    ************9999999966666667789****************************************************99665.67******* PP
   S: 161 vrlWdl..ktgkllrtltgghtdsvyslsfdsngkelvsgsldgtvklwdlq........tgecvrtlnghtdnvksvrfspnderlvsgssDgsiri 248
    +++W+ k +l+ tlt+ h ++v+ l+++++gk l sg++d+++ +w+ + ++v +l+gh++ + ++++ +++++sgs+D+s+r+
   Q: 258 IKVWNKkdKKHSLVATLTK-HLSAVNALAISEDGKVLYSGACDRSILVWERLingddeelHMSVVGALRGHRKAIMCLAVA--SDLVLSGSADKSLRV 352
    *****9888999******9.*****************************988889999999999*****************..*************** PP
   S: 249 W 249
    W
   Q: 353 W 353
    * PP
   

Organism Arabidopsis thaliana
Protein Sequence
(Fasta)
MGLLPCSCPL PCNETRSECE TKSTHHQSES STSSSLLSQP SLPLVPSLSF QHQSSSVDHH 60
CLATLKDKSS YVSSLAVSDK LLYTGSSNSE IRVWPREPPF SPEYSTGDDR NVVANGNGGV 120
It may take some time, please wait.

Protein Fasta Sequence



>IUUC-Ath-006722|E3,WD_repeat;UBD,Beta-Prp|Arabidopsis thaliana
Please wait for a moment...
Nucleotide Sequence
(Fasta)
TCACAGTAAC GACACATGGG TCAATCAGTT CCCCCACCCT ACACTACCCT AAACTTTAAT 60
TTTCTTTTAA TTATCTTTTA CCTTTCTATA TAATTCTCCA TTAAACTCCC CAGATCTTCC 120
It may take some time, please wait.

Nucleotide Fasta Sequence



>IUUC-Ath-006722|E3,WD_repeat;UBD,Beta-Prp|Arabidopsis thaliana
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR011042--6-blade_b-propeller_TolB-like
IPR020472--G-protein_beta_WD-40_rep
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

KEGG ath:AT1G24130
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Bdi-014607 Brachypodium distachyon 46.01 1.00e-87 315.00
IUUC-Bol-016325 Brassica oleracea 82.86 6.00e-163 566.00
IUUC-Bra-018099 Brassica rapa 83.53 2.00e-175 607.00
IUUC-Gma-043262 Glycine max 56.14 3.00e-113 400.00
IUUC-Hvu-047304 Hordeum vulgare 46.30 5.00e-85 307.00
IUUC-Lpe-050736 Leersia perrieri 48.35 3.00e-87 314.00
IUUC-Mtr-057831 Medicago truncatula 55.24 2.00e-104 372.00
IUUC-Mac-064538 Musa acuminata 53.46 4.00e-102 363.00
IUUC-Oba-075265 Oryza barthii 45.18 4.00e-68 251.00
IUUC-Obr-076628 Oryza brachyantha 45.28 3.00e-82 298.00
IUUC-Ogl-076961 Oryza glaberrima 47.51 1.00e-79 289.00
IUUC-Ogu-078745 Oryza glumaepatula 46.80 3.00e-85 308.00
IUUC-Oin-079355 Oryza indica 48.75 3.00e-78 285.00
IUUC-Olo-080540 Oryza longistaminata 45.94 4.00e-73 267.00
IUUC-Ome-081476 Oryza meridionalis 46.65 4.00e-79 287.00
IUUC-Oni-082952 Oryza nivara 48.61 4.00e-78 284.00
IUUC-Opu-083726 Oryza punctata 50.26 1.00e-87 315.00
IUUC-Oru-084480 Oryza rufipogon 48.20 2.00e-77 282.00
IUUC-Osa-086252 Oryza sativa 48.20 1.00e-77 282.00
IUUC-Sit-109950 Setaria italica 51.47 1.00e-79 289.00
IUUC-Sly-111917 Solanum lycopersicum 57.88 5.00e-110 390.00
IUUC-Stu-112480 Solanum tuberosum 59.13 6.00e-109 387.00
IUUC-Sbi-114568 Sorghum bicolor 53.10 9.00e-80 290.00
IUUC-Tae-122815 Triticum aestivum 46.69 6.00e-84 303.00
IUUC-Tur-126500 Triticum urartu 46.96 2.00e-84 305.00
IUUC-Vvi-131635 Vitis vinifera 61.68 3.00e-127 447.00
Created Date 25-Jun-2017

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