iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Aly-005681

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

RING-type E3 ubiquitin transferase

Genbank Nucleotide ID

GL348717

Gene Name

PUB13; ARALYDRAFT_905845

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
scaffold_501549.1	scaffold_501549.1	scaffold_501549.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/U-box	4.90e-35	120.1	256	328

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 2    vpeeflCpIslelMrdPvvlpsGitydrssIekwlasggktcPvtrqplteedlvPnltlrrliqawceenss 74
           +p++f+CpIsle+MrdPv+++sG+ty+r++Iekw++ g++tcP+t+q lt+++l+Pn++lr+li +wce+n++
   Q: 256  IPDDFRCPISLEMMRDPVIVSSGQTYERTCIEKWIEGGHSTCPKTQQALTSTTLTPNYVLRSLIAQWCEANDI 328
           89********************************************************************987 PP

Organism

Arabidopsis lyrata

Protein Sequence
(Fasta)

MEEEKASAAQ SLIDVVNEIA TISDYRITVK KLCYNLARRL KLLVPMFEEI KESNEPISED 60
TLSTLVNLKE AMCSAKDYLK FCSEGSKIYL VMEREQVTSK LMEVSVKLEQ SLSQIPYEDL 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AGACAGAGAA GAATCAATCA ATGGAGGAAG AGAAAGCTTC TGCTGCACAG AGCTTAATCG 60
ATGTAGTTAA CGAGATTGCG ACGATTTCTG ATTATCGTAT TACGGTGAAG AAGCTTTGTT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0808--Transferase

Interpro

IPR011989--ARM-like
IPR016024--ARM-type_fold
IPR000225--Armadillo
IPR003613--Ubox_domain
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50176--ARM_REPEAT
PS51698--U_BOX

Pfam

PF00514--Arm
PF04564--U-box

SMART

SM00185--ARM
SM00504--Ubox

Gene Ontology

GO:0005829--C:cytosol
GO:0005634--C:nucleus
GO:0004842--F:ubiquitin-protein transferase activity
GO:0042742--P:defense response to bacterium
GO:0043066--P:negative regulation of apoptotic process
GO:2000028--P:regulation of photoperiodism, flowering

KEGG

aly:ARALYDRAFT_905845

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000439	Aegilops tauschii	62.50	0.00e+00	652.00
IUUC-Ath-007618	Arabidopsis thaliana	97.88	0.00e+00	1281.00
IUUC-Bdi-014829	Brachypodium distachyon	58.58	0.00e+00	678.00
IUUC-Bol-015254	Brassica oleracea	92.13	0.00e+00	1183.00
IUUC-Bra-017857	Brassica rapa	91.68	0.00e+00	1170.00
IUUC-Gma-043064	Glycine max	70.36	0.00e+00	910.00
IUUC-Hvu-047052	Hordeum vulgare	61.52	1.00e-179	622.00
IUUC-Lpe-051284	Leersia perrieri	58.13	0.00e+00	671.00
IUUC-Mtr-058332	Medicago truncatula	68.31	0.00e+00	879.00
IUUC-Mac-065438	Musa acuminata	58.41	0.00e+00	687.00
IUUC-Oba-075184	Oryza barthii	58.31	0.00e+00	691.00
IUUC-Obr-076590	Oryza brachyantha	57.72	0.00e+00	677.00
IUUC-Ogl-077386	Oryza glaberrima	58.31	0.00e+00	691.00
IUUC-Ogu-078326	Oryza glumaepatula	58.31	0.00e+00	691.00
IUUC-Oin-079687	Oryza indica	58.31	0.00e+00	689.00
IUUC-Olo-081001	Oryza longistaminata	58.31	0.00e+00	690.00
IUUC-Ome-081417	Oryza meridionalis	57.95	0.00e+00	697.00
IUUC-Oni-082379	Oryza nivara	58.31	0.00e+00	689.00
IUUC-Opu-083774	Oryza punctata	57.21	0.00e+00	687.00
IUUC-Oru-084885	Oryza rufipogon	58.14	0.00e+00	688.00
IUUC-Osa-085946	Oryza sativa	57.82	0.00e+00	682.00
IUUC-Ppa-095383	Physcomitrella patens	50.98	5.00e-179	620.00
IUUC-Pop-098809	Populus trichocarpa	73.26	0.00e+00	932.00
IUUC-Ppe-102057	Prunus persica	70.07	0.00e+00	786.00
IUUC-Smo-109340	Selaginella moellendorffii	51.99	7.00e-162	563.00
IUUC-Sit-110392	Setaria italica	63.57	0.00e+00	664.00
IUUC-Sly-111594	Solanum lycopersicum	69.35	0.00e+00	898.00
IUUC-Stu-112876	Solanum tuberosum	68.44	0.00e+00	880.00
IUUC-Sbi-113843	Sorghum bicolor	56.45	0.00e+00	652.00
IUUC-Tca-121745	Theobroma cacao	69.89	0.00e+00	892.00
IUUC-Tae-124662	Triticum aestivum	57.67	0.00e+00	681.00
IUUC-Tur-126448	Triticum urartu	61.73	0.00e+00	669.00
IUUC-Vvi-131752	Vitis vinifera	72.99	0.00e+00	888.00
IUUC-Xtr-132376	Xenopus tropicalis	29.18	2.00e-12	67.80

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence