iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Dre-028742

UUCD1 version

UUC-DaR-00500

Ensembl Protein ID

ENSDARP00000048143.5

UniProt Accession

Q1LXD4; Q1LXD4_DANRE

Genbank Protein ID

AAI55194.1; CAK04471.1

Protein Name

Histone-binding protein RBBP4; Retinoblastoma binding protein 4

Genbank Nucleotide ID

BX465206; BX000986

Gene Name

rbbp4; rbb4; rbb4-2; CH211-210B19.2-001-2

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSDARG00000029058.7	ENSDART00000048144.5	ENSDARP00000048143.5

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	2.00e-35	120.1	272	306

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf...sdtllvsGsdDgtikvWDlrtg 33
           Ht++v+cl+f   s+ +l++Gs D+t+ +WDlr  
   Q: 272  HTAEVNCLSFnpySEFILATGSADKTVALWDLRNL 306
           **********96554568*************9875 PP

Organism

Danio rerio

Protein Sequence
(Fasta)

MADKEAAFDD AVEERVINEE YKIWKKNTPF LYDLVMTHAL EWPSLTAQWL PDVTRPEGKD 60
FSVHRLVLGT HTSDEQNHLV IASVQLPNDD AQFDASHYDS EKGEFGGFGS VSGKIEIEIK 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GGTTTCCTAA TGTCTCGTGG CGCCAACAGA GGGCGGTATA GCGGTTTTGG CGCGTGATTC 60
TTCTCCCCGG CAGAAAAAGC CGCTCTTCTT CTGCTCTCCG CTCATTGGTG GCGCGTTCTC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1267--Proteomics identification
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR022052--Histone-bd_RBBP4_N
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF12265--CAF1C_H4-bd
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0005634--C:nucleus

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000757	Aegilops tauschii	59.85	6.00e-138	483.00
IUUC-Aml-001339	Ailuropoda melanoleuca	96.66	0.00e+00	835.00
IUUC-Atr-003075	Amborella trichopoda	66.91	2.00e-168	585.00
IUUC-Apl-003952	Anas platyrhynchos	97.37	0.00e+00	849.00
IUUC-Aca-004508	Anolis carolinensis	96.46	0.00e+00	850.00
IUUC-Aly-006342	Arabidopsis lyrata	67.25	3.00e-163	568.00
IUUC-Ath-006855	Arabidopsis thaliana	67.50	1.00e-163	569.00
IUUC-Acl-008163	Aspergillus clavatus	52.53	2.00e-123	436.00
IUUC-Afl-008645	Aspergillus flavus	52.49	1.00e-122	433.00
IUUC-Afu-009091	Aspergillus fumigatus	53.03	1.00e-124	439.00
IUUC-Ani-009478	Aspergillus nidulans	48.48	3.00e-102	365.00
IUUC-Ang-009707	Aspergillus niger	52.02	5.00e-119	421.00
IUUC-Aor-010028	Aspergillus oryzae	52.49	1.00e-122	433.00
IUUC-Ate-010416	Aspergillus terreus	52.02	2.00e-122	432.00
IUUC-Ame-010598	Astyanax mexicanus	99.53	0.00e+00	877.00
IUUC-Bgr-012001	Blumeria graminis	50.24	1.00e-108	386.00
IUUC-Bta-012851	Bos taurus	97.41	0.00e+00	858.00
IUUC-Bci-013815	Botrytis cinerea	51.49	1.00e-125	443.00
IUUC-Bdi-014926	Brachypodium distachyon	67.75	3.00e-161	561.00
IUUC-Bra-016725	Brassica rapa	62.80	1.00e-158	552.00
IUUC-Cel-018587	Caenorhabditis elegans	71.84	0.00e+00	630.00
IUUC-Cja-019884	Callithrix jacchus	97.41	0.00e+00	858.00
IUUC-Cfa-020343	Canis familiaris	97.41	0.00e+00	858.00
IUUC-Cpo-021591	Cavia porcellus	97.41	0.00e+00	858.00
IUUC-Cre-022563	Chlamydomonas reinhardtii	61.59	8.00e-156	543.00
IUUC-Cho-024506	Choloepus hoffmanni	96.93	0.00e+00	851.00
IUUC-Cin-025589	Ciona intestinalis	89.05	0.00e+00	795.00
IUUC-Csv-026216	Ciona savignyi	89.52	0.00e+00	804.00
IUUC-Cgl-026564	Colletotrichum gloeosporioides	49.02	3.00e-119	422.00
IUUC-Cne-026792	Cryptococcus neoformans	55.64	2.00e-133	469.00
IUUC-Dno-029114	Dasypus novemcinctus	97.41	0.00e+00	858.00
IUUC-Dse-031282	Dothistroma septosporum	47.15	2.00e-102	366.00
IUUC-Dme-032126	Drosophila melanogaster	91.44	0.00e+00	796.00
IUUC-Ete-032731	Echinops telfairi	97.41	0.00e+00	858.00
IUUC-Eca-033533	Equus caballus	95.94	0.00e+00	829.00
IUUC-Eeu-034644	Erinaceus europaeus	96.85	2.00e-127	449.00
IUUC-Fca-036202	Felis catus	97.41	0.00e+00	858.00
IUUC-Fal-037084	Ficedula albicollis	97.37	0.00e+00	848.00
IUUC-Fox-037974	Fusarium oxysporum	51.34	6.00e-125	441.00
IUUC-Fso-038246	Fusarium solani	49.08	1.00e-110	392.00
IUUC-Gmo-039214	Gadus morhua	97.39	0.00e+00	852.00
IUUC-Gga-040396	Gallus gallus	97.41	0.00e+00	858.00
IUUC-Gac-042477	Gasterosteus aculeatus	97.89	0.00e+00	864.00
IUUC-Gma-042791	Glycine max	67.17	6.00e-161	560.00
IUUC-Ggo-045422	Gorilla gorilla	88.99	0.00e+00	761.00
IUUC-Hsa-045683	Homo sapiens	97.41	0.00e+00	858.00
IUUC-Hvu-047457	Hordeum vulgare	68.09	1.00e-75	275.00
IUUC-Itr-047950	Ictidomys tridecemlineatus	97.41	0.00e+00	858.00
IUUC-Kpa-049119	Komagataella pastoris	36.95	1.00e-71	263.00
IUUC-Lpe-051337	Leersia perrieri	67.75	1.00e-161	562.00
IUUC-Loc-052473	Lepisosteus oculatus	98.82	0.00e+00	869.00
IUUC-Lma-053275	Leptosphaeria maculans	45.51	4.00e-68	251.00
IUUC-Laf-054114	Loxodonta africana	97.41	0.00e+00	858.00
IUUC-Mcc-055648	Macaca mulatta	97.17	0.00e+00	852.00
IUUC-Meu-056490	Macropus eugenii	97.41	0.00e+00	858.00
IUUC-Mor-056947	Magnaporthe oryzae	51.09	4.00e-118	418.00
IUUC-Mtr-057853	Medicago truncatula	66.08	3.00e-159	554.00
IUUC-Mla-058884	Melampsora laricipopulina	52.50	5.00e-126	444.00
IUUC-Mga-059452	Meleagris gallopavo	97.37	0.00e+00	849.00
IUUC-Mmr-060678	Microcebus murinus	98.02	0.00e+00	820.00
IUUC-Mdo-062450	Monodelphis domestica	97.78	0.00e+00	827.00
IUUC-Mmu-063282	Mus musculus	97.41	0.00e+00	858.00
IUUC-Mac-065480	Musa acuminata	66.50	9.00e-160	556.00
IUUC-Mpu-066529	Mustela putorius furo	96.46	0.00e+00	851.00
IUUC-Mlu-068072	Myotis lucifugus	97.41	0.00e+00	858.00
IUUC-Nfi-068374	Neosartorya fischeri	53.03	1.00e-121	429.00
IUUC-Ncr-068794	Neurospora crassa	49.02	1.00e-117	416.00
IUUC-Nle-069577	Nomascus leucogenys	97.41	0.00e+00	858.00
IUUC-Opr-070245	Ochotona princeps	82.08	0.00e+00	678.00
IUUC-Ont-071809	Oreochromis niloticus	99.06	0.00e+00	874.00
IUUC-Oan-072839	Ornithorhynchus anatinus	97.14	0.00e+00	844.00
IUUC-Ocu-074515	Oryctolagus cuniculus	91.51	0.00e+00	744.00
IUUC-Oba-075719	Oryza barthii	57.11	4.00e-133	468.00
IUUC-Obr-076859	Oryza brachyantha	67.58	1.00e-159	556.00
IUUC-Ogl-077920	Oryza glaberrima	67.75	2.00e-161	561.00
IUUC-Ogu-078048	Oryza glumaepatula	57.11	2.00e-132	466.00
IUUC-Oin-079960	Oryza indica	55.50	9.00e-121	427.00
IUUC-Olo-080553	Oryza longistaminata	54.73	8.00e-129	454.00
IUUC-Ome-081835	Oryza meridionalis	67.75	6.00e-162	564.00
IUUC-Oni-082494	Oryza nivara	56.87	1.00e-131	463.00
IUUC-Opu-083913	Oryza punctata	65.25	1.00e-150	526.00
IUUC-Oru-084666	Oryza rufipogon	67.75	2.00e-161	561.00
IUUC-Osa-085884	Oryza sativa	67.75	2.00e-161	561.00
IUUC-Ola-086664	Oryzias latipes	98.82	0.00e+00	866.00
IUUC-Oga-088364	Otolemur garnettii	88.73	0.00e+00	772.00
IUUC-Oar-089652	Ovis aries	97.41	0.00e+00	858.00
IUUC-Psi-093300	Pelodiscus sinensis	97.17	0.00e+00	786.00
IUUC-Pma-094307	Petromyzon marinus	92.24	0.00e+00	820.00
IUUC-Pno-095153	Phaeosphaeria nodorum	48.18	6.00e-108	384.00
IUUC-Ppa-095800	Physcomitrella patens	66.91	1.00e-167	582.00
IUUC-Pfo-097376	Poecilia formosa	98.82	0.00e+00	869.00
IUUC-Pab-097697	Pongo abelii	97.41	0.00e+00	858.00
IUUC-Pop-099709	Populus trichocarpa	65.94	2.00e-166	578.00
IUUC-Pca-100642	Procavia capensis	88.12	0.00e+00	728.00
IUUC-Ppe-101212	Prunus persica	66.75	1.00e-162	566.00
IUUC-Pva-102253	Pteropus vampyrus	97.41	0.00e+00	858.00
IUUC-Pgr-103441	Puccinia graminis	53.96	1.00e-122	433.00
IUUC-Pte-104332	Pyrenophora teres	48.66	3.00e-110	392.00
IUUC-Pyt-104516	Pyrenophora triticirepentis	48.66	2.00e-110	392.00
IUUC-Rno-105678	Rattus norvegicus	97.41	0.00e+00	858.00
IUUC-Sce-106364	Saccharomyces cerevisiae	37.84	4.00e-71	261.00
IUUC-Sha-106663	Sarcophilus harrisii	97.37	0.00e+00	848.00
IUUC-Spo-108145	Schizosaccharomyces pombe	51.72	2.00e-119	422.00
IUUC-Smo-109159	Selaginella moellendorffii	64.96	9.00e-163	566.00
IUUC-Sit-110144	Setaria italica	67.00	9.00e-153	533.00
IUUC-Sly-111680	Solanum lycopersicum	65.22	2.00e-163	568.00
IUUC-Stu-111931	Solanum tuberosum	64.96	5.00e-162	563.00
IUUC-Sbi-114637	Sorghum bicolor	67.25	3.00e-160	558.00
IUUC-Sre-114980	Sporisorium reilianum	54.35	3.00e-136	478.00
IUUC-Ssc-115711	Sus scrofa	97.17	0.00e+00	786.00
IUUC-Tgu-116925	Taeniopygia guttata	97.14	0.00e+00	847.00
IUUC-Tru-117549	Takifugu rubripes	98.36	0.00e+00	863.00
IUUC-Tni-120398	Tetraodon nigroviridis	98.36	0.00e+00	867.00
IUUC-Tca-121841	Theobroma cacao	67.50	2.00e-163	568.00
IUUC-Tre-122190	Trichoderma reesei	51.34	9.00e-117	413.00
IUUC-Tvi-122304	Trichoderma virens	50.61	6.00e-125	441.00
IUUC-Tae-124648	Triticum aestivum	67.00	6.00e-153	533.00
IUUC-Tme-126949	Tuber melanosporum	55.14	9.00e-130	456.00
IUUC-Uma-129424	Ustilago maydis	53.15	1.00e-136	479.00
IUUC-Vda-129873	Verticillium dahliae	50.36	1.00e-126	446.00
IUUC-Vpa-130079	Vicugna pacos	96.93	0.00e+00	853.00
IUUC-Vvi-131585	Vitis vinifera	66.50	4.00e-161	560.00
IUUC-Xma-133066	Xiphophorus maculatus	99.06	0.00e+00	874.00
IUUC-Zma-135873	Zea mays	66.50	8.00e-153	533.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence