iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Pop-099991

Ensembl Protein ID

POPTR_0002s11830.1

UniProt Accession

B9GNN7; B9GNN7_POPTR

Genbank Protein ID

EEE80417.1

Protein Name

Transducin-related family protein

Genbank Nucleotide ID

CM000338

Gene Name

POPTRDRAFT_551772; POPTR_0002s11830g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0002s11830	POPTR_0002s11830.1	POPTR_0002s11830.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.90e-09	38.5	207	234

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 4    dsvtclaf.sd.tllvsGsdDgtikvWD 29
           ++v ++ + +d  ++ sG+ Dg +++WD
   Q: 207  GRVLSVTWsPDaSRIYSGTSDGFVRCWD 234
           6799************************ PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MLGAVYRNSS IEWRPSPVVS LATSADESQV AAAREDGSLE IWLVSPGSVG WHCQLTIHGD 60
PNSRVSSLVW CRAGSKGLPC GRLFSSSIDG SVSEWDIFHL KQKNVLESTG VSIWQMAVAP 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CCAACACGCA CCGCGTCGCC TTCTTTCACG TCGCTCTCCC TCCCTCCCTC CCTCCTCACC 60
TCATAAAATC ATCACTCCCT AACTACTTAA ACCCTAGGTA ACATAGCTCG CCGATTTCTC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00320--WD40

KEGG

pop:POPTR_0002s11830g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001161	Aegilops tauschii	54.62	0.00e+00	803.00
IUUC-Atr-003076	Amborella trichopoda	57.38	0.00e+00	857.00
IUUC-Aly-006271	Arabidopsis lyrata	64.46	0.00e+00	1015.00
IUUC-Ath-007331	Arabidopsis thaliana	63.93	0.00e+00	1005.00
IUUC-Ago-007843	Ashbya gossypii	22.58	2.00e-25	110.00
IUUC-Bdi-014203	Brachypodium distachyon	56.92	0.00e+00	885.00
IUUC-Bol-016163	Brassica oleracea	64.02	0.00e+00	1037.00
IUUC-Bra-017482	Brassica rapa	63.78	0.00e+00	1040.00
IUUC-Cpo-022088	Cavia porcellus	24.24	3.00e-50	192.00
IUUC-Cin-025384	Ciona intestinalis	24.67	3.00e-42	166.00
IUUC-Dse-031179	Dothistroma septosporum	21.52	1.00e-28	121.00
IUUC-Dme-031603	Drosophila melanogaster	24.57	2.00e-22	100.00
IUUC-Gga-041172	Gallus gallus	25.57	3.00e-48	186.00
IUUC-Gma-044129	Glycine max	59.63	0.00e+00	994.00
IUUC-Hvu-047229	Hordeum vulgare	58.36	0.00e+00	742.00
IUUC-Kpa-049370	Komagataella pastoris	23.64	3.00e-17	83.60
IUUC-Lpe-051220	Leersia perrieri	56.95	0.00e+00	846.00
IUUC-Loc-052617	Lepisosteus oculatus	23.06	2.00e-45	177.00
IUUC-Mor-057245	Magnaporthe oryzae	26.61	6.00e-26	112.00
IUUC-Mpo-057446	Magnaporthe poae	25.14	2.00e-24	107.00
IUUC-Mtr-058748	Medicago truncatula	55.62	0.00e+00	857.00
IUUC-Mga-060018	Meleagris gallopavo	24.68	4.00e-40	159.00
IUUC-Mac-065380	Musa acuminata	60.49	0.00e+00	1009.00
IUUC-Oba-074974	Oryza barthii	57.40	0.00e+00	880.00
IUUC-Obr-076586	Oryza brachyantha	59.75	0.00e+00	769.00
IUUC-Ogl-077782	Oryza glaberrima	58.74	0.00e+00	890.00
IUUC-Ogu-078333	Oryza glumaepatula	55.14	0.00e+00	860.00
IUUC-Oin-079852	Oryza indica	58.87	0.00e+00	891.00
IUUC-Ome-081442	Oryza meridionalis	57.73	0.00e+00	875.00
IUUC-Oni-082341	Oryza nivara	55.03	0.00e+00	858.00
IUUC-Opu-083824	Oryza punctata	56.58	0.00e+00	864.00
IUUC-Oru-084827	Oryza rufipogon	57.16	0.00e+00	875.00
IUUC-Osa-085742	Oryza sativa	58.62	0.00e+00	886.00
IUUC-Pan-092060	Papio anubis	25.14	4.00e-32	131.00
IUUC-Ppa-095599	Physcomitrella patens	38.88	9.00e-169	587.00
IUUC-Ppe-101747	Prunus persica	73.11	0.00e+00	1200.00
IUUC-Sja-107777	Schizosaccharomyces japonicus	24.14	7.00e-45	175.00
IUUC-Smo-108851	Selaginella moellendorffii	38.27	4.00e-160	558.00
IUUC-Sit-110454	Setaria italica	57.06	0.00e+00	880.00
IUUC-Sly-111875	Solanum lycopersicum	66.95	0.00e+00	1065.00
IUUC-Stu-112275	Solanum tuberosum	68.21	0.00e+00	1054.00
IUUC-Sbi-114624	Sorghum bicolor	55.48	0.00e+00	759.00
IUUC-Tca-121606	Theobroma cacao	66.31	0.00e+00	1119.00
IUUC-Tme-126995	Tuber melanosporum	27.47	1.00e-26	114.00
IUUC-Vvi-131256	Vitis vinifera	73.13	0.00e+00	1195.00
IUUC-Yli-134565	Yarrowia lipolytica	24.66	6.00e-20	92.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence