iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Pop-099307

Ensembl Protein ID

POPTR_0008s02920.1

UniProt Accession

U5G4V5; U5G4V5_POPTR

Genbank Protein ID

ERP57296.1

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

CM000344

Gene Name

POPTR_0008s02920g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0008s02920	POPTR_0008s02920.1	POPTR_0008s02920.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	3.80e-09	37.6	157	191

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvl 35
           H++ v++++f  d  +l+s s Dg+ ++W   +g +
   Q: 157  HKS-VRDMDFsLDsEFLASTSTDGSARIWKAEDGSP 191
           666.9******555***************9888876 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MESGQGTVTC GSWIRRPENL NLAVLGRSSK KKNSASPSVL EIFSFDTETT SLSTSPQVTY 60
VFEETEGELV TIAVHPSGDD LVCSSTKGGC KLFELQCQET NLKLLAKDLP PLQDVGPQTC 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CATCCTGGAC ATCACGGTGT CATCGTTCGC AAGTTGCTGG ACTCCAAATA TTGTCCAATA 60
TATCCAGAAT TTTTCGGAGG AAAAGTTCTC TCTGCCTCTG CCTCTGCCTC TGCCTTCTCT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0472--Membrane
KW-1185--Reference proteome
KW-0812--Transmembrane
KW-1133--Transmembrane helix
KW-0853--WD repeat

Interpro

IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0030176--C:integral component of endoplasmic reticulum membrane
GO:0005096--F:GTPase activator activity
GO:0051020--F:GTPase binding
GO:0005090--F:Sar guanyl-nucleotide exchange factor activity
GO:0009306--P:protein secretion
GO:0003400--P:regulation of COPII vesicle coating

KEGG

pop:POPTR_0008s02920g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000155	Aegilops tauschii	55.98	2.00e-109	388.00
IUUC-Bdi-014908	Brachypodium distachyon	57.67	1.00e-115	409.00
IUUC-Cel-018480	Caenorhabditis elegans	27.36	2.00e-08	53.50
IUUC-Oba-075552	Oryza barthii	57.37	7.00e-130	456.00
IUUC-Ogl-077345	Oryza glaberrima	57.37	7.00e-130	456.00
IUUC-Ogu-078334	Oryza glumaepatula	57.37	7.00e-130	456.00
IUUC-Oin-079600	Oryza indica	57.11	2.00e-129	454.00
IUUC-Olo-080918	Oryza longistaminata	57.33	3.00e-131	460.00
IUUC-Ome-081986	Oryza meridionalis	57.60	7.00e-130	456.00
IUUC-Oni-082430	Oryza nivara	57.62	3.00e-100	357.00
IUUC-Opu-083902	Oryza punctata	57.43	2.00e-116	411.00
IUUC-Oru-084937	Oryza rufipogon	57.62	2.00e-100	358.00
IUUC-Osa-085881	Oryza sativa	57.11	2.00e-129	454.00
IUUC-Smo-108754	Selaginella moellendorffii	47.73	7.00e-67	246.00
IUUC-Tae-124657	Triticum aestivum	56.79	4.00e-114	404.00
IUUC-Tur-126597	Triticum urartu	60.95	1.00e-94	339.00
IUUC-Vvi-131686	Vitis vinifera	76.66	6.00e-151	526.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence