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Tag Content
UUCD2 ID IUUC-Pop-099043
UUCD1 version UUC-PoT-00766
Ensembl Protein ID POPTR_0022s00810.1
UniProt Accession U7DZM4; U7DZM4_POPTR
Genbank Protein ID ERP48465.1
Protein Name Ribosome biogenesis protein BOP1 homolog
Genbank Nucleotide ID KE702756
Gene Name POPTR_0022s00810g
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
POPTR_0022s00810 POPTR_0022s00810.1 POPTR_0022s00810.1
Status Unreviewed
Classification
Family E-Value Score Start End
E3 adaptor/Cullin RING/DCX/DWD 9.10e-13 49.0 234 272
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DWD
   S: 1    gHtdsvtclaf..sdtllvsGsdDgtikvWDlrtgvllk 37
           gH++ v +++   s+  ++sGs Dgt+++W++ t++++k
   Q: 234  GHKGAVMSISTeaSGQWIASGSSDGTVRLWEVETCRCIK 272
           79999999998877789*******************986 PP
   
Organism Populus trichocarpa
Functional Description
(View)

Functional Description


     Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit.
 Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit.
Protein Sequence
(Fasta)
MLIFLSRRKI YDEYNDEEVE LTKEETKLIR RVLKGKAPHG DFDPYAPYVD WFKWEDSKHP 60
LSNAPEPKSR FIPSKWEAKK VLGLVRAIRK GLIKFDKPKE EPRFYMLWGD DASSSEKSGH 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Pop-099043|E3,WD_repeat|Populus trichocarpa
Please wait for a moment...
Nucleotide Sequence
(Fasta)
ATGTTGATTT TTCTTTCAAG GCGAAAGATT TACGATGAGT ACAATGATGA GGAGGTAGAG 60
TTGACAAAAG AAGAAACCAA ACTTATTCGT AGAGTGCTCA AAGGAAAGGC TCCACATGGT 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Pop-099043|E3,WD_repeat|Populus trichocarpa
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0853--WD repeat
Interpro

IPR028598--BOP1/Erb1
IPR012953--BOP1_N_dom
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION
Pfam

PF08145--BOP1NT
PF00400--WD40
SMART

SM01035--BOP1NT
SM00320--WD40
Gene Ontology

GO:0005654--C:nucleoplasm
GO:0070545--C:PeBoW complex
GO:0030687--C:preribosome, large subunit precursor
GO:0043021--F:ribonucleoprotein complex binding
GO:0000466--P:maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000463--P:maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
KEGG pop:POPTR_0022s00810g
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-001158 Aegilops tauschii 64.94 0.00e+00 677.00
IUUC-Atr-003171 Amborella trichopoda 68.46 4.00e-139 487.00
IUUC-Apl-003545 Anas platyrhynchos 42.58 1.00e-104 373.00
IUUC-Aly-005649 Arabidopsis lyrata 73.00 0.00e+00 870.00
IUUC-Ath-007625 Arabidopsis thaliana 71.94 0.00e+00 832.00
IUUC-Ani-009365 Aspergillus nidulans 41.92 7.00e-114 404.00
IUUC-Bgr-012286 Blumeria graminis 42.78 6.00e-123 434.00
IUUC-Bta-013569 Bos taurus 46.28 2.00e-135 476.00
IUUC-Bdi-014895 Brachypodium distachyon 69.98 0.00e+00 796.00
IUUC-Bol-016099 Brassica oleracea 72.52 0.00e+00 866.00
IUUC-Bra-017174 Brassica rapa 72.34 0.00e+00 872.00
IUUC-Cel-018201 Caenorhabditis elegans 40.24 5.00e-104 371.00
IUUC-Cja-019009 Callithrix jacchus 40.43 5.00e-114 404.00
IUUC-Cfa-020173 Canis familiaris 42.02 1.00e-119 423.00
IUUC-Cre-022650 Chlamydomonas reinhardtii 49.22 5.00e-150 524.00
IUUC-Cin-025782 Ciona intestinalis 42.67 6.00e-133 468.00
IUUC-Cgl-026393 Colletotrichum gloeosporioides 38.30 7.00e-88 317.00
IUUC-Cne-027004 Cryptococcus neoformans 44.37 1.00e-134 473.00
IUUC-Cme-027242 Cyanidioschyzon merolae 35.04 6.00e-90 324.00
IUUC-Dse-031443 Dothistroma septosporum 40.53 1.00e-112 400.00
IUUC-Dme-031786 Drosophila melanogaster 44.27 1.00e-137 483.00
IUUC-Eca-033677 Equus caballus 46.03 2.00e-134 473.00
IUUC-Fca-035888 Felis catus 44.72 8.00e-132 463.00
IUUC-Fox-037973 Fusarium oxysporum 41.44 1.00e-124 439.00
IUUC-Fso-038187 Fusarium solani 40.92 3.00e-122 432.00
IUUC-Ggr-039746 Gaeumannomyces graminis 41.23 1.00e-125 443.00
IUUC-Gma-044215 Glycine max 79.72 0.00e+00 926.00
IUUC-Ggo-045587 Gorilla gorilla 44.27 2.00e-135 475.00
IUUC-Hvu-047526 Hordeum vulgare 69.04 0.00e+00 798.00
IUUC-Lpe-051135 Leersia perrieri 66.07 0.00e+00 719.00
IUUC-Loc-051930 Lepisosteus oculatus 47.97 8.00e-148 516.00
IUUC-Lma-053290 Leptosphaeria maculans 41.81 3.00e-111 395.00
IUUC-Laf-053903 Loxodonta africana 41.93 5.00e-116 411.00
IUUC-Mor-057135 Magnaporthe oryzae 41.34 2.00e-119 422.00
IUUC-Mpo-057475 Magnaporthe poae 40.03 2.00e-116 412.00
IUUC-Mtr-058689 Medicago truncatula 69.75 0.00e+00 840.00
IUUC-Mla-059149 Melampsora laricipopulina 43.70 9.00e-126 443.00
IUUC-Mvi-060485 Microbotryum violaceum 44.14 2.00e-114 407.00
IUUC-Mac-064535 Musa acuminata 68.11 3.00e-167 581.00
IUUC-Ncr-068767 Neurospora crassa 42.40 8.00e-111 394.00
IUUC-Oba-075980 Oryza barthii 66.25 0.00e+00 718.00
IUUC-Obr-076799 Oryza brachyantha 69.50 0.00e+00 789.00
IUUC-Ogl-077134 Oryza glaberrima 69.93 0.00e+00 770.00
IUUC-Ogu-078655 Oryza glumaepatula 67.08 0.00e+00 746.00
IUUC-Oin-079654 Oryza indica 69.93 0.00e+00 769.00
IUUC-Olo-080706 Oryza longistaminata 66.25 0.00e+00 719.00
IUUC-Oni-082508 Oryza nivara 65.48 0.00e+00 714.00
IUUC-Opu-083707 Oryza punctata 66.07 0.00e+00 716.00
IUUC-Oru-084453 Oryza rufipogon 66.25 0.00e+00 719.00
IUUC-Osa-085811 Oryza sativa 69.75 0.00e+00 769.00
IUUC-Ptr-090631 Pan troglodytes 38.43 1.00e-41 162.00
IUUC-Pan-092306 Papio anubis 44.54 5.00e-134 471.00
IUUC-Pma-094622 Petromyzon marinus 45.36 6.00e-140 490.00
IUUC-Pno-094794 Phaeosphaeria nodorum 38.32 2.00e-103 369.00
IUUC-Ppa-095528 Physcomitrella patens 59.58 1.00e-132 466.00
IUUC-Ppe-102078 Prunus persica 76.90 0.00e+00 872.00
IUUC-Pgr-103525 Puccinia graminis 42.49 4.00e-114 405.00
IUUC-Ptt-103929 Puccinia triticina 42.76 2.00e-110 393.00
IUUC-Pte-104029 Pyrenophora teres 41.61 3.00e-124 438.00
IUUC-Pyt-104446 Pyrenophora triticirepentis 41.61 2.00e-123 436.00
IUUC-Sce-106381 Saccharomyces cerevisiae 40.36 6.00e-121 427.00
IUUC-Sha-106519 Sarcophilus harrisii 45.21 4.00e-138 484.00
IUUC-Sja-107908 Schizosaccharomyces japonicus 41.00 1.00e-120 426.00
IUUC-Smo-109604 Selaginella moellendorffii 60.38 0.00e+00 659.00
IUUC-Sit-110551 Setaria italica 69.04 0.00e+00 777.00
IUUC-Sly-110970 Solanum lycopersicum 80.48 6.00e-135 473.00
IUUC-Stu-112593 Solanum tuberosum 80.99 0.00e+00 925.00
IUUC-Sbi-113945 Sorghum bicolor 69.27 0.00e+00 793.00
IUUC-Sre-115188 Sporisorium reilianum 38.92 1.00e-112 400.00
IUUC-Ssc-115352 Sus scrofa 45.15 4.00e-137 481.00
IUUC-Tca-121664 Theobroma cacao 84.34 0.00e+00 958.00
IUUC-Tae-125772 Triticum aestivum 70.14 0.00e+00 780.00
IUUC-Tur-126781 Triticum urartu 64.56 0.00e+00 660.00
IUUC-Tme-127080 Tuber melanosporum 46.94 4.00e-141 494.00
IUUC-Ttr-128514 Tursiops truncatus 42.27 1.00e-81 297.00
IUUC-Uma-129556 Ustilago maydis 39.47 1.00e-109 390.00
IUUC-Vda-129715 Verticillium dahliae 40.82 2.00e-116 413.00
IUUC-Vvi-131211 Vitis vinifera 82.41 0.00e+00 915.00
IUUC-Yli-134438 Yarrowia lipolytica 41.96 6.00e-112 397.00
IUUC-Zma-135341 Zea mays 62.26 0.00e+00 751.00
Created Date 25-Jun-2017

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