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Tag Content
iUUCD ID IUUC-Gga-040993
Ensembl Protein ID ENSGALP00000031992.2
UniProt Accession Q4JIM4; Q90X08; PSN1_CHICK
Genbank Protein ID AAK95408.1; AAY85979.1
Protein Name Presenilin-1; Presenilin-1 NTF subunit; Presenilin-1 CTF subunit
Genbank Nucleotide ID AY043492; DQ084362
Gene Name PSEN1
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
ENSGALG00000009320.5 ENSGALT00000032629.4 ENSGALP00000031992.2
Status Unreviewed
Classification
Family E-Value Score Start End
UBD/Alpha-Helix/CUE 2.20e-07 31.1 273 300
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   UBD/Alpha-Helix/CUE

   S: 2    letaleqLkeiFPnldysviqvvLeant 29
    +eta+e+++++FP+l+ys+++v+L++++
   Q: 273 VETAQERNETLFPALIYSSTMVWLVNMA 300
    89***********************997 PP
   

Organism Gallus gallus
Functional Description
(View)

Functional Description



     Catalytic subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors and APP (beta-amyloid precursor protein). Requires the presence of the other members of the gamma-secretase complex for protease activity. Plays a role in Notch and Wnt signaling cascades and regulation of downstream processes via its role in processing key regulatory proteins.
Catalytic subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors and APP (beta-amyloid precursor protein). Requires the presence of the other members of the gamma-secretase complex for protease activity. Plays a role in Notch and Wnt signaling cascades and regulation of downstream processes via its role in processing key regulatory proteins.
Protein Sequence
(Fasta)
MTELSAHLPQ FQHGQMTENF PDNHLSNTND NSERRRHDNS ERRRNDNPGS ETNGQPQNNI 60
QQVVDQDEEE DEELTLKYGA KHVIMLFVPV TLCMVVVVAT IKSVSFYTRK DGQLIYTPFT 120
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Protein Fasta Sequence



>IUUC-Gga-040993|UBD,CUE|Gallus gallus
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Nucleotide Sequence
(Fasta)
GGGCCGGAAG CGAGTGGGGC CGGGTTGCGG GTGCTCAGGA GCCGGTGGCC GAGTCCGTGG 60
AACGGAGCTG GTCCGGGCAG GTCGGTGTGG GGGGCCGCGT GTGGGGCCGG GCTGGAGCAG 120
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Nucleotide Fasta Sequence



>IUUC-Gga-040993|UBD,CUE|Gallus gallus
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Sequence Source Ensembl
Keyword

KW-0053--Apoptosis
KW-0130--Cell adhesion
KW-0965--Cell junction
KW-1003--Cell membrane
KW-0966--Cell projection
KW-0181--Complete proteome
KW-0256--Endoplasmic reticulum
KW-0333--Golgi apparatus
KW-0378--Hydrolase
KW-0472--Membrane
KW-0914--Notch signaling pathway
KW-0597--Phosphoprotein
KW-0645--Protease
KW-1185--Reference proteome
KW-0770--Synapse
KW-0812--Transmembrane
KW-1133--Transmembrane helix

Interpro

IPR002031--Pept_A22A_PS1
IPR001108--Peptidase_A22A
IPR006639--Preselin/SPP

Pfam

PF01080--Presenilin

PRINTS

PR01072--PRESENILIN
PR01073--PRESENILIN1

SMART

SM00730--PSN

Gene Ontology

GO:0016235--C:aggresome
GO:0030424--C:axon
GO:0005938--C:cell cortex
GO:0030054--C:cell junction
GO:0005813--C:centrosome
GO:0035253--C:ciliary rootlet
GO:0031410--C:cytoplasmic vesicle
GO:0043198--C:dendritic shaft
GO:0005783--C:endoplasmic reticulum
GO:0005789--C:endoplasmic reticulum membrane
GO:0070765--C:gamma-secretase complex
GO:0005794--C:Golgi apparatus
GO:0000139--C:Golgi membrane
GO:0030426--C:growth cone
GO:0016021--C:integral component of membrane
GO:0005887--C:integral component of plasma membrane
GO:0000776--C:kinetochore
GO:0045121--C:membrane raft
GO:0005739--C:mitochondrion
GO:0043025--C:neuronal cell body
GO:0005640--C:nuclear outer membrane
GO:0005634--C:nucleus
GO:0048471--C:perinuclear region of cytoplasm
GO:0005886--C:plasma membrane
GO:0098793--C:presynapse
GO:0005791--C:rough endoplasmic reticulum
GO:0005790--C:smooth endoplasmic reticulum
GO:0030018--C:Z disc
GO:0042500--F:aspartic endopeptidase activity, intramembrane cleaving
GO:0008013--F:beta-catenin binding
GO:0045296--F:cadherin binding
GO:0005262--F:calcium channel activity
GO:0004175--F:endopeptidase activity
GO:0000186--P:activation of MAPKK activity
GO:0042987--P:amyloid precursor protein catabolic process
GO:0042982--P:amyloid precursor protein metabolic process
GO:0000045--P:autophagosome assembly
GO:0034205--P:beta-amyloid formation
GO:0050435--P:beta-amyloid metabolic process
GO:0001568--P:blood vessel development
GO:0048854--P:brain morphogenesis
GO:0021870--P:Cajal-Retzius cell differentiation
GO:0006816--P:calcium ion transport
GO:0060070--P:canonical Wnt signaling pathway
GO:0001708--P:cell fate specification
GO:0006974--P:cellular response to DNA damage stimulus
GO:0021795--P:cerebral cortex cell migration
GO:0015871--P:choline transport
GO:0021904--P:dorsal/ventral neural tube patterning
GO:0030326--P:embryonic limb morphogenesis
GO:0050673--P:epithelial cell proliferation
GO:0001947--P:heart looping
GO:0002244--P:hematopoietic progenitor cell differentiation
GO:0035556--P:intracellular signal transduction
GO:0015813--P:L-glutamate transport
GO:0006509--P:membrane protein ectodomain proteolysis
GO:0007613--P:memory
GO:0006839--P:mitochondrial transport
GO:0043011--P:myeloid dendritic cell differentiation
GO:0043066--P:negative regulation of apoptotic process
GO:2001234--P:negative regulation of apoptotic signaling pathway
GO:0050771--P:negative regulation of axonogenesis
GO:0007175--P:negative regulation of epidermal growth factor-activated receptor activity
GO:2000059--P:negative regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process
GO:0000122--P:negative regulation of transcription from RNA polymerase II promoter
GO:0051444--P:negative regulation of ubiquitin-protein transferase activity
GO:0051402--P:neuron apoptotic process
GO:0048666--P:neuron development
GO:0001764--P:neuron migration
GO:0007220--P:Notch receptor processing
GO:0007219--P:Notch signaling pathway
GO:0043065--P:positive regulation of apoptotic process
GO:0043085--P:positive regulation of catalytic activity
GO:0050820--P:positive regulation of coagulation
GO:0060999--P:positive regulation of dendritic spine development
GO:0043406--P:positive regulation of MAP kinase activity
GO:0032436--P:positive regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0001921--P:positive regulation of receptor recycling
GO:0045893--P:positive regulation of transcription, DNA-templated
GO:0009791--P:post-embryonic development
GO:0006486--P:protein glycosylation
GO:0016485--P:protein processing
GO:0015031--P:protein transport
GO:0060828--P:regulation of canonical Wnt signaling pathway
GO:0042325--P:regulation of phosphorylation
GO:0043393--P:regulation of protein binding
GO:0060075--P:regulation of resting membrane potential
GO:0048167--P:regulation of synaptic plasticity
GO:0051966--P:regulation of synaptic transmission, glutamatergic
GO:0006979--P:response to oxidative stress
GO:0016337--P:single organismal cell-cell adhesion
GO:0048705--P:skeletal system morphogenesis
GO:0043589--P:skin morphogenesis
GO:0051563--P:smooth endoplasmic reticulum calcium ion homeostasis
GO:0001756--P:somitogenesis
GO:0016080--P:synaptic vesicle targeting
GO:0002286--P:T cell activation involved in immune response
GO:0050852--P:T cell receptor signaling pathway
GO:0048538--P:thymus development

KEGG gga:373977
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-000686 Aegilops tauschii 34.75 4.00e-25 110.00
IUUC-Aml-001648 Ailuropoda melanoleuca 86.30 2.00e-151 528.00
IUUC-Atr-003039 Amborella trichopoda 32.43 6.00e-39 154.00
IUUC-Apl-003727 Anas platyrhynchos 96.38 0.00e+00 748.00
IUUC-Aca-004582 Anolis carolinensis 87.39 0.00e+00 707.00
IUUC-Ame-011500 Astyanax mexicanus 75.72 4.00e-152 531.00
IUUC-Bta-013026 Bos taurus 80.87 1.00e-180 625.00
IUUC-Bdi-014196 Brachypodium distachyon 33.24 1.00e-28 120.00
IUUC-Bol-015841 Brassica oleracea 35.28 3.00e-31 129.00
IUUC-Bra-017580 Brassica rapa 34.70 3.00e-29 122.00
IUUC-Cel-018553 Caenorhabditis elegans 53.87 8.00e-96 343.00
IUUC-Cja-019994 Callithrix jacchus 87.44 1.00e-176 612.00
IUUC-Cfa-020074 Canis familiaris 84.01 0.00e+00 642.00
IUUC-Cpo-022237 Cavia porcellus 86.07 0.00e+00 635.00
IUUC-Csa-023537 Chlorocebus sabaeus 83.90 0.00e+00 655.00
IUUC-Cho-024735 Choloepus hoffmanni 74.36 5.00e-168 583.00
IUUC-Cin-025780 Ciona intestinalis 62.66 2.00e-126 445.00
IUUC-Csv-025967 Ciona savignyi 62.62 5.00e-122 430.00
IUUC-Dre-028689 Danio rerio 71.09 8.00e-146 509.00
IUUC-Dno-029758 Dasypus novemcinctus 84.11 0.00e+00 640.00
IUUC-Dor-030609 Dipodomys ordii 64.04 5.00e-143 500.00
IUUC-Dme-031929 Drosophila melanogaster 56.52 3.00e-113 401.00
IUUC-Ete-032487 Echinops telfairi 76.19 3.00e-74 272.00
IUUC-Eeu-035134 Erinaceus europaeus 86.64 2.00e-133 468.00
IUUC-Fca-036243 Felis catus 84.50 0.00e+00 637.00
IUUC-Fal-036600 Ficedula albicollis 96.15 0.00e+00 741.00
IUUC-Gac-042342 Gasterosteus aculeatus 70.31 3.00e-136 478.00
IUUC-Ggo-044859 Gorilla gorilla 82.52 7.00e-143 499.00
IUUC-Hsa-046822 Homo sapiens 83.69 0.00e+00 653.00
IUUC-Hvu-047141 Hordeum vulgare 35.53 6.00e-27 115.00
IUUC-Itr-048420 Ictidomys tridecemlineatus 87.58 1.00e-143 501.00
IUUC-Lch-049946 Latimeria chalumnae 73.35 9.00e-157 546.00
IUUC-Lpe-051132 Leersia perrieri 33.33 5.00e-31 128.00
IUUC-Loc-052469 Lepisosteus oculatus 65.03 5.00e-148 517.00
IUUC-Laf-053979 Loxodonta africana 83.22 7.00e-165 573.00
IUUC-Mcc-055682 Macaca mulatta 83.69 0.00e+00 653.00
IUUC-Meu-056004 Macropus eugenii 72.99 1.00e-147 516.00
IUUC-Mga-059466 Meleagris gallopavo 98.93 0.00e+00 768.00
IUUC-Mdo-062122 Monodelphis domestica 82.28 0.00e+00 644.00
IUUC-Mmu-063176 Mus musculus 81.49 2.00e-179 621.00
IUUC-Mpu-065927 Mustela putorius furo 85.04 0.00e+00 649.00
IUUC-Mlu-067079 Myotis lucifugus 83.01 0.00e+00 663.00
IUUC-Nle-070180 Nomascus leucogenys 83.69 0.00e+00 653.00
IUUC-Opr-070847 Ochotona princeps 78.45 3.00e-168 584.00
IUUC-Ont-071846 Oreochromis niloticus 78.27 1.00e-151 529.00
IUUC-Oan-072783 Ornithorhynchus anatinus 84.66 3.00e-138 484.00
IUUC-Ocu-074527 Oryctolagus cuniculus 83.80 0.00e+00 657.00
IUUC-Oba-075256 Oryza barthii 33.33 1.00e-28 120.00
IUUC-Ogl-077097 Oryza glaberrima 33.08 6.00e-30 124.00
IUUC-Ogu-078570 Oryza glumaepatula 33.08 6.00e-30 124.00
IUUC-Oin-079244 Oryza indica 33.08 5.00e-30 125.00
IUUC-Olo-080484 Oryza longistaminata 37.50 5.00e-25 107.00
IUUC-Ome-081814 Oryza meridionalis 33.59 2.00e-30 127.00
IUUC-Oni-082057 Oryza nivara 33.08 4.00e-30 125.00
IUUC-Opu-084176 Oryza punctata 33.93 1.00e-30 127.00
IUUC-Oru-084618 Oryza rufipogon 33.08 9.00e-30 124.00
IUUC-Osa-085602 Oryza sativa 33.08 8.00e-30 124.00
IUUC-Olu-087811 Ostreococcus lucimarinus 34.44 2.00e-44 172.00
IUUC-Oar-090348 Ovis aries 82.59 0.00e+00 659.00
IUUC-Ptr-091060 Pan troglodytes 83.69 0.00e+00 653.00
IUUC-Pan-091855 Papio anubis 77.33 2.00e-165 574.00
IUUC-Psi-093505 Pelodiscus sinensis 92.95 0.00e+00 731.00
IUUC-Pfo-097396 Poecilia formosa 76.22 3.00e-157 548.00
IUUC-Pab-098591 Pongo abelii 84.19 0.00e+00 657.00
IUUC-Pca-101029 Procavia capensis 80.30 3.00e-172 597.00
IUUC-Ppe-101495 Prunus persica 31.17 1.00e-32 133.00
IUUC-Pva-102244 Pteropus vampyrus 79.19 6.00e-174 603.00
IUUC-Rno-105861 Rattus norvegicus 81.49 1.00e-177 615.00
IUUC-Sha-107045 Sarcophilus harrisii 84.14 0.00e+00 648.00
IUUC-Ssl-108386 Sclerotinia sclerotiorum 31.58 3.20e+00 26.20
IUUC-Smo-109325 Selaginella moellendorffii 35.14 2.00e-37 149.00
IUUC-Sit-110624 Setaria italica 32.71 4.00e-26 112.00
IUUC-Stu-112433 Solanum tuberosum 33.50 2.00e-30 126.00
IUUC-Sar-113169 Sorex araneus 82.49 9.00e-132 463.00
IUUC-Sbi-114305 Sorghum bicolor 33.76 4.00e-27 115.00
IUUC-Ssc-115766 Sus scrofa 82.80 0.00e+00 627.00
IUUC-Tgu-116469 Taeniopygia guttata 97.35 4.00e-161 560.00
IUUC-Tru-117732 Takifugu rubripes 77.56 5.00e-149 520.00
IUUC-Tsy-119624 Tarsius syrichta 75.21 1.00e-167 582.00
IUUC-Tni-119852 Tetraodon nigroviridis 72.91 1.00e-140 493.00
IUUC-Tca-121865 Theobroma cacao 31.99 9.00e-37 147.00
IUUC-Tae-123984 Triticum aestivum 35.64 1.00e-26 114.00
IUUC-Tur-126237 Triticum urartu 35.64 1.00e-26 114.00
IUUC-Tbe-128148 Tupaia belangeri 73.35 1.00e-140 492.00
IUUC-Ttr-128793 Tursiops truncatus 82.38 1.00e-176 612.00
IUUC-Vpa-130625 Vicugna pacos 69.36 3.00e-139 488.00
IUUC-Vvi-131312 Vitis vinifera 32.73 3.00e-29 122.00
IUUC-Xtr-131790 Xenopus tropicalis 82.13 4.00e-170 590.00
IUUC-Xma-133377 Xiphophorus maculatus 77.20 3.00e-155 541.00
Created Date 25-Jun-2017

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